miRNA display CGI


Results 121 - 140 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 123587 0.69 0.523708
Target:  5'- cGGCgGCGCCgggagCCGCCgCGGCCgucagCGGGu -3'
miRNA:   3'- -CCG-CGCGGa----GGUGGaGCCGGag---GCUC- -5'
14620 5' -63.3 NC_003521.1 + 240716 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 81169 0.69 0.51471
Target:  5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3'
miRNA:   3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 200395 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 167 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 204108 0.7 0.505775
Target:  5'- uGGCgccacuGCGCCUCCACCUgcucgGGCCaggcgCCGGa -3'
miRNA:   3'- -CCG------CGCGGAGGUGGAg----CCGGa----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 220184 0.7 0.505775
Target:  5'- aGGCGC-CCaCCAgCgcgCGGCuCUCCGAGc -3'
miRNA:   3'- -CCGCGcGGaGGUgGa--GCCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 43245 0.7 0.496907
Target:  5'- gGGCGCGCUccaUCCGCCUCaucGCCaUCCu-- -3'
miRNA:   3'- -CCGCGCGG---AGGUGGAGc--CGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 184369 0.7 0.479386
Target:  5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3'
miRNA:   3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 205004 0.7 0.478518
Target:  5'- cGGCGCGCaccgccagguucuCgcccacgCCGCCguagUCGGCCUUCGGGu -3'
miRNA:   3'- -CCGCGCG-------------Ga------GGUGG----AGCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 24681 0.7 0.478518
Target:  5'- uGUGCGCCcagguggccuuccUCUGCCgCGGCCUCCGc- -3'
miRNA:   3'- cCGCGCGG-------------AGGUGGaGCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 113773 0.7 0.47074
Target:  5'- cGGCaccGCGUCUCCAuCCUCGGuuCCUCCc-- -3'
miRNA:   3'- -CCG---CGCGGAGGU-GGAGCC--GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 88460 0.7 0.47074
Target:  5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3'
miRNA:   3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5'
14620 5' -63.3 NC_003521.1 + 145261 0.7 0.462173
Target:  5'- aGgGCGCCUCCucgGCCUCGGCggCCa-- -3'
miRNA:   3'- cCgCGCGGAGG---UGGAGCCGgaGGcuc -5'
14620 5' -63.3 NC_003521.1 + 63250 0.71 0.45369
Target:  5'- cGGCGcCGCCaccuuugacgagUCCuuCCUCGGCgaCCGGGu -3'
miRNA:   3'- -CCGC-GCGG------------AGGu-GGAGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 13802 0.71 0.436981
Target:  5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3'
miRNA:   3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 56917 0.71 0.42876
Target:  5'- aGCGCcgcagcaccGCCUCCagcACCUCGGCCUCg--- -3'
miRNA:   3'- cCGCG---------CGGAGG---UGGAGCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 226071 0.71 0.420632
Target:  5'- aGGCGCGCCcCgGCCgCGGCCggcCCGu- -3'
miRNA:   3'- -CCGCGCGGaGgUGGaGCCGGa--GGCuc -5'
14620 5' -63.3 NC_003521.1 + 223666 0.71 0.420632
Target:  5'- cGCuGCGCCUCgGCCUCGcGCCgcugCUGGa -3'
miRNA:   3'- cCG-CGCGGAGgUGGAGC-CGGa---GGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.