miRNA display CGI


Results 61 - 80 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 95335 0.66 0.736886
Target:  5'- cGCGCGCagggCUCCACCUgCaGCgUgCGAGu -3'
miRNA:   3'- cCGCGCG----GAGGUGGA-GcCGgAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 99955 0.66 0.745825
Target:  5'- gGGgGCGgCggCGCCUCGGCCgagaCCGcGa -3'
miRNA:   3'- -CCgCGCgGagGUGGAGCCGGa---GGCuC- -5'
14620 5' -63.3 NC_003521.1 + 103263 0.69 0.560257
Target:  5'- cGCGUGCaCUgCugCUCGGCCggcgCCGu- -3'
miRNA:   3'- cCGCGCG-GAgGugGAGCCGGa---GGCuc -5'
14620 5' -63.3 NC_003521.1 + 103662 0.66 0.745825
Target:  5'- cGGCG-GCCgcugCgGCCgCGGCCauggcgggcgagUCCGAGc -3'
miRNA:   3'- -CCGCgCGGa---GgUGGaGCCGG------------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 104108 0.67 0.644434
Target:  5'- cGGCGCGCUgCCAguCCUCGGCggcgUCCu-- -3'
miRNA:   3'- -CCGCGCGGaGGU--GGAGCCGg---AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 104891 0.66 0.745825
Target:  5'- aGGCGuCGCa--CAUCccgCGGCCguggCCGAGg -3'
miRNA:   3'- -CCGC-GCGgagGUGGa--GCCGGa---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 105053 0.67 0.681887
Target:  5'- aGCGCcacuGCCgccaCCGCCuUCGGUC-CCGGGa -3'
miRNA:   3'- cCGCG----CGGa---GGUGG-AGCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 109439 0.66 0.718785
Target:  5'- aGGCuGaCGCCcgUCACCUCGGCgaaCUCCa-- -3'
miRNA:   3'- -CCG-C-GCGGa-GGUGGAGCCG---GAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 109582 0.66 0.700433
Target:  5'- uGCGCGUgaagugcgCCAgCUCGGCCagCGAGc -3'
miRNA:   3'- cCGCGCGga------GGUgGAGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 111553 0.67 0.634094
Target:  5'- --gGCGCCUCUACCUCgaggugcGGCUgagCCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG-------CCGGa--GGCUc -5'
14620 5' -63.3 NC_003521.1 + 112466 0.66 0.72787
Target:  5'- gGGCGCGCCcggcggggCCACCuacuUCGGCaUCaCGcAGa -3'
miRNA:   3'- -CCGCGCGGa-------GGUGG----AGCCGgAG-GC-UC- -5'
14620 5' -63.3 NC_003521.1 + 112648 0.66 0.745825
Target:  5'- aGCGCGUCUaCCACCU-GGCCcagaUgGAGa -3'
miRNA:   3'- cCGCGCGGA-GGUGGAgCCGGa---GgCUC- -5'
14620 5' -63.3 NC_003521.1 + 113773 0.7 0.47074
Target:  5'- cGGCaccGCGUCUCCAuCCUCGGuuCCUCCc-- -3'
miRNA:   3'- -CCG---CGCGGAGGU-GGAGCC--GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 115397 0.75 0.273211
Target:  5'- gGGCGCggGCggCCGCCaCGGCCUCCGGa -3'
miRNA:   3'- -CCGCG--CGgaGGUGGaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 116928 0.67 0.644434
Target:  5'- cGCGCGCCgacagCaCGCgaCaGCUUCCGAGg -3'
miRNA:   3'- cCGCGCGGa----G-GUGgaGcCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 117109 0.68 0.606847
Target:  5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3'
miRNA:   3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 117251 0.67 0.652887
Target:  5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3'
miRNA:   3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 118954 0.68 0.616234
Target:  5'- gGGCcaGCGCCcgagacagUCCcuCCUCGGUgUCCGAc -3'
miRNA:   3'- -CCG--CGCGG--------AGGu-GGAGCCGgAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 119535 0.66 0.736886
Target:  5'- gGGuUGUGCCgcagcaCCACCUCGGCg-CCGuGc -3'
miRNA:   3'- -CC-GCGCGGa-----GGUGGAGCCGgaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 120274 0.67 0.681887
Target:  5'- gGGCGCuCCcCCgggACCgcCGGCCgCCGAGg -3'
miRNA:   3'- -CCGCGcGGaGG---UGGa-GCCGGaGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.