miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 142248 0.69 0.54188
Target:  5'- cGCGgGCCcgcUCCuCCUCGGCCgacUCGGGc -3'
miRNA:   3'- cCGCgCGG---AGGuGGAGCCGGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 142335 0.66 0.691181
Target:  5'- gGGUGCGCgaggCCGCCgccaCGGCCgCCGcGg -3'
miRNA:   3'- -CCGCGCGga--GGUGGa---GCCGGaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 142590 0.68 0.616234
Target:  5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3'
miRNA:   3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 144026 0.67 0.681887
Target:  5'- cGCGCGCUUCC-CCgucucCGGUCUgCGGc -3'
miRNA:   3'- cCGCGCGGAGGuGGa----GCCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 144471 0.69 0.54188
Target:  5'- cGGCGCGCCaCCACCauaaCCUgCGAGg -3'
miRNA:   3'- -CCGCGCGGaGGUGGagccGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 145261 0.7 0.462173
Target:  5'- aGgGCGCCUCCucgGCCUCGGCggCCa-- -3'
miRNA:   3'- cCgCGCGGAGG---UGGAGCCGgaGGcuc -5'
14620 5' -63.3 NC_003521.1 + 145298 0.66 0.72787
Target:  5'- cGGCGUcucGCCgggcaUCCAgUUCGGCCUgaagcaCGAGg -3'
miRNA:   3'- -CCGCG---CGG-----AGGUgGAGCCGGAg-----GCUC- -5'
14620 5' -63.3 NC_003521.1 + 145387 0.66 0.700433
Target:  5'- cGGUGCGCgaCgGCCUgGGCCUgcucaUCGAc -3'
miRNA:   3'- -CCGCGCGgaGgUGGAgCCGGA-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 145986 0.67 0.681887
Target:  5'- uGGCGCGCUUcCCGCUgcCGGCUUuuGu- -3'
miRNA:   3'- -CCGCGCGGA-GGUGGa-GCCGGAggCuc -5'
14620 5' -63.3 NC_003521.1 + 146528 0.66 0.709636
Target:  5'- --gGCGgCUCCACC-CGGgucCCUCCGGc -3'
miRNA:   3'- ccgCGCgGAGGUGGaGCC---GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 146841 0.74 0.285274
Target:  5'- gGGgGCGCCUCguCCUCG-CCUCCGc- -3'
miRNA:   3'- -CCgCGCGGAGguGGAGCcGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 148522 0.74 0.285274
Target:  5'- cGGCuGCGCCUCCuCC-CGcGCCUuccCCGAGg -3'
miRNA:   3'- -CCG-CGCGGAGGuGGaGC-CGGA---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 148851 0.68 0.619992
Target:  5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3'
miRNA:   3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 149181 0.73 0.330787
Target:  5'- cGGCGCGCgucgCCACCggCGGCCa-CGAGg -3'
miRNA:   3'- -CCGCGCGga--GGUGGa-GCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 149545 0.66 0.745825
Target:  5'- cGGCGCGCgCUCCuucuucuuCCcCGGUUUCCc-- -3'
miRNA:   3'- -CCGCGCG-GAGGu-------GGaGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 151310 0.66 0.745825
Target:  5'- cGCGCGCaaggCgGCCaggcgggUGGCgUCCGAGg -3'
miRNA:   3'- cCGCGCGga--GgUGGa------GCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 152774 0.74 0.287736
Target:  5'- cGGCGuCGCCUCCugcgccuugcgcaccGCCUCGGUCaCCGGc -3'
miRNA:   3'- -CCGC-GCGGAGG---------------UGGAGCCGGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 152836 0.68 0.625632
Target:  5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3'
miRNA:   3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 153177 0.72 0.389071
Target:  5'- gGGCuGCGCCUCCAgCCUgugcgaGGCCUgCGGc -3'
miRNA:   3'- -CCG-CGCGGAGGU-GGAg-----CCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 153438 0.8 0.120561
Target:  5'- cGGCGUcaccuccgccgccucGuCCUCCACCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGCG---------------C-GGAGGUGGAGCCGGAGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.