miRNA display CGI


Results 121 - 140 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 153712 0.66 0.700433
Target:  5'- gGGaCGCGCgUCCACCagCGGCa--CGAu -3'
miRNA:   3'- -CC-GCGCGgAGGUGGa-GCCGgagGCUc -5'
14620 5' -63.3 NC_003521.1 + 153921 0.66 0.691181
Target:  5'- cGUGCaGCUUCCAcuCCUCGGCCacccgCCGc- -3'
miRNA:   3'- cCGCG-CGGAGGU--GGAGCCGGa----GGCuc -5'
14620 5' -63.3 NC_003521.1 + 154616 0.72 0.403868
Target:  5'- cGGCGUgccgccgcccuucGCCUCCACCgUGGCC-CgCGAGu -3'
miRNA:   3'- -CCGCG-------------CGGAGGUGGaGCCGGaG-GCUC- -5'
14620 5' -63.3 NC_003521.1 + 157179 0.66 0.691181
Target:  5'- aGCGCGCCUaUCugCagaaGGUCUCgGAGg -3'
miRNA:   3'- cCGCGCGGA-GGugGag--CCGGAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 162431 0.68 0.597475
Target:  5'- -aCGCGCUuucgguuuccagUCCGCCUCGGCgguguuccucCUCCGGc -3'
miRNA:   3'- ccGCGCGG------------AGGUGGAGCCG----------GAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 163789 0.66 0.700433
Target:  5'- aGCgGCGCCaCCACCgcCGGCCUCa--- -3'
miRNA:   3'- cCG-CGCGGaGGUGGa-GCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 169168 0.74 0.279191
Target:  5'- uGGUGCGCCgcUCCAaCUCGGCCUCgGu- -3'
miRNA:   3'- -CCGCGCGG--AGGUgGAGCCGGAGgCuc -5'
14620 5' -63.3 NC_003521.1 + 174504 0.74 0.304149
Target:  5'- aGGCG-GCCUCCACggCUUGGaucaCCUCCGGGu -3'
miRNA:   3'- -CCGCgCGGAGGUG--GAGCC----GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 176954 0.71 0.412596
Target:  5'- cGGCGCGCCgccucgUCCACCUgugucagGGCCUUgGAc -3'
miRNA:   3'- -CCGCGCGG------AGGUGGAg------CCGGAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 178601 0.66 0.691181
Target:  5'- gGGCGC-CCUCCugCagcaCGGCgUCCa-- -3'
miRNA:   3'- -CCGCGcGGAGGugGa---GCCGgAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 179094 0.73 0.317258
Target:  5'- uGCGCGCCUCCuguACCagucccgCGGCUUCCGu- -3'
miRNA:   3'- cCGCGCGGAGG---UGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 179532 0.67 0.653826
Target:  5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3'
miRNA:   3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181126 0.69 0.550126
Target:  5'- cGGCGCgGCaguugagguagggCUCCACCU-GGCgUCUGAGc -3'
miRNA:   3'- -CCGCG-CG-------------GAGGUGGAgCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181173 0.66 0.700433
Target:  5'- aGGCGCGCCagcgUCUGCCgcaccaacGCCUgCGAGc -3'
miRNA:   3'- -CCGCGCGG----AGGUGGagc-----CGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181863 0.67 0.681887
Target:  5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3'
miRNA:   3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 183595 0.66 0.745825
Target:  5'- cGCGagaGCCgCuCGCCUCugagcuacGCCUCCGAGu -3'
miRNA:   3'- cCGCg--CGGaG-GUGGAGc-------CGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 183722 0.67 0.672559
Target:  5'- cGGCuGCugggGCCUCUACC-CGGCCaUCCu-- -3'
miRNA:   3'- -CCG-CG----CGGAGGUGGaGCCGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 184195 0.66 0.745825
Target:  5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3'
miRNA:   3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 184369 0.7 0.479386
Target:  5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3'
miRNA:   3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.