miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 179094 0.73 0.317258
Target:  5'- uGCGCGCCUCCuguACCagucccgCGGCUUCCGu- -3'
miRNA:   3'- cCGCGCGGAGG---UGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 178601 0.66 0.691181
Target:  5'- gGGCGC-CCUCCugCagcaCGGCgUCCa-- -3'
miRNA:   3'- -CCGCGcGGAGGugGa---GCCGgAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 176954 0.71 0.412596
Target:  5'- cGGCGCGCCgccucgUCCACCUgugucagGGCCUUgGAc -3'
miRNA:   3'- -CCGCGCGG------AGGUGGAg------CCGGAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 174504 0.74 0.304149
Target:  5'- aGGCG-GCCUCCACggCUUGGaucaCCUCCGGGu -3'
miRNA:   3'- -CCGCgCGGAGGUG--GAGCC----GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 169168 0.74 0.279191
Target:  5'- uGGUGCGCCgcUCCAaCUCGGCCUCgGu- -3'
miRNA:   3'- -CCGCGCGG--AGGUgGAGCCGGAGgCuc -5'
14620 5' -63.3 NC_003521.1 + 163789 0.66 0.700433
Target:  5'- aGCgGCGCCaCCACCgcCGGCCUCa--- -3'
miRNA:   3'- cCG-CGCGGaGGUGGa-GCCGGAGgcuc -5'
14620 5' -63.3 NC_003521.1 + 162431 0.68 0.597475
Target:  5'- -aCGCGCUuucgguuuccagUCCGCCUCGGCgguguuccucCUCCGGc -3'
miRNA:   3'- ccGCGCGG------------AGGUGGAGCCG----------GAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 157179 0.66 0.691181
Target:  5'- aGCGCGCCUaUCugCagaaGGUCUCgGAGg -3'
miRNA:   3'- cCGCGCGGA-GGugGag--CCGGAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 154616 0.72 0.403868
Target:  5'- cGGCGUgccgccgcccuucGCCUCCACCgUGGCC-CgCGAGu -3'
miRNA:   3'- -CCGCG-------------CGGAGGUGGaGCCGGaG-GCUC- -5'
14620 5' -63.3 NC_003521.1 + 153921 0.66 0.691181
Target:  5'- cGUGCaGCUUCCAcuCCUCGGCCacccgCCGc- -3'
miRNA:   3'- cCGCG-CGGAGGU--GGAGCCGGa----GGCuc -5'
14620 5' -63.3 NC_003521.1 + 153712 0.66 0.700433
Target:  5'- gGGaCGCGCgUCCACCagCGGCa--CGAu -3'
miRNA:   3'- -CC-GCGCGgAGGUGGa-GCCGgagGCUc -5'
14620 5' -63.3 NC_003521.1 + 153438 0.8 0.120561
Target:  5'- cGGCGUcaccuccgccgccucGuCCUCCACCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGCG---------------C-GGAGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 153177 0.72 0.389071
Target:  5'- gGGCuGCGCCUCCAgCCUgugcgaGGCCUgCGGc -3'
miRNA:   3'- -CCG-CGCGGAGGU-GGAg-----CCGGAgGCUc -5'
14620 5' -63.3 NC_003521.1 + 152836 0.68 0.625632
Target:  5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3'
miRNA:   3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 152774 0.74 0.287736
Target:  5'- cGGCGuCGCCUCCugcgccuugcgcaccGCCUCGGUCaCCGGc -3'
miRNA:   3'- -CCGC-GCGGAGG---------------UGGAGCCGGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 151310 0.66 0.745825
Target:  5'- cGCGCGCaaggCgGCCaggcgggUGGCgUCCGAGg -3'
miRNA:   3'- cCGCGCGga--GgUGGa------GCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 149545 0.66 0.745825
Target:  5'- cGGCGCGCgCUCCuucuucuuCCcCGGUUUCCc-- -3'
miRNA:   3'- -CCGCGCG-GAGGu-------GGaGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 149181 0.73 0.330787
Target:  5'- cGGCGCGCgucgCCACCggCGGCCa-CGAGg -3'
miRNA:   3'- -CCGCGCGga--GGUGGa-GCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 148851 0.68 0.619992
Target:  5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3'
miRNA:   3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 148522 0.74 0.285274
Target:  5'- cGGCuGCGCCUCCuCC-CGcGCCUuccCCGAGg -3'
miRNA:   3'- -CCG-CGCGGAGGuGGaGC-CGGA---GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.