miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 112466 0.66 0.72787
Target:  5'- gGGCGCGCCcggcggggCCACCuacuUCGGCaUCaCGcAGa -3'
miRNA:   3'- -CCGCGCGGa-------GGUGG----AGCCGgAG-GC-UC- -5'
14620 5' -63.3 NC_003521.1 + 111553 0.67 0.634094
Target:  5'- --gGCGCCUCUACCUCgaggugcGGCUgagCCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG-------CCGGa--GGCUc -5'
14620 5' -63.3 NC_003521.1 + 109582 0.66 0.700433
Target:  5'- uGCGCGUgaagugcgCCAgCUCGGCCagCGAGc -3'
miRNA:   3'- cCGCGCGga------GGUgGAGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 109439 0.66 0.718785
Target:  5'- aGGCuGaCGCCcgUCACCUCGGCgaaCUCCa-- -3'
miRNA:   3'- -CCG-C-GCGGa-GGUGGAGCCG---GAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 105053 0.67 0.681887
Target:  5'- aGCGCcacuGCCgccaCCGCCuUCGGUC-CCGGGa -3'
miRNA:   3'- cCGCG----CGGa---GGUGG-AGCCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 104891 0.66 0.745825
Target:  5'- aGGCGuCGCa--CAUCccgCGGCCguggCCGAGg -3'
miRNA:   3'- -CCGC-GCGgagGUGGa--GCCGGa---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 104108 0.67 0.644434
Target:  5'- cGGCGCGCUgCCAguCCUCGGCggcgUCCu-- -3'
miRNA:   3'- -CCGCGCGGaGGU--GGAGCCGg---AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 103662 0.66 0.745825
Target:  5'- cGGCG-GCCgcugCgGCCgCGGCCauggcgggcgagUCCGAGc -3'
miRNA:   3'- -CCGCgCGGa---GgUGGaGCCGG------------AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 103263 0.69 0.560257
Target:  5'- cGCGUGCaCUgCugCUCGGCCggcgCCGu- -3'
miRNA:   3'- cCGCGCG-GAgGugGAGCCGGa---GGCuc -5'
14620 5' -63.3 NC_003521.1 + 99955 0.66 0.745825
Target:  5'- gGGgGCGgCggCGCCUCGGCCgagaCCGcGa -3'
miRNA:   3'- -CCgCGCgGagGUGGAGCCGGa---GGCuC- -5'
14620 5' -63.3 NC_003521.1 + 95335 0.66 0.736886
Target:  5'- cGCGCGCagggCUCCACCUgCaGCgUgCGAGu -3'
miRNA:   3'- cCGCGCG----GAGGUGGA-GcCGgAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 95192 0.68 0.616234
Target:  5'- cGGCGCGgaaCUCCACgCcCGGCa-CCGGGu -3'
miRNA:   3'- -CCGCGCg--GAGGUG-GaGCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 94961 0.66 0.736886
Target:  5'- cGGCGcCGCCcgCCGCCg-GGCC-CaGAGa -3'
miRNA:   3'- -CCGC-GCGGa-GGUGGagCCGGaGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 91930 0.78 0.178286
Target:  5'- cGGCGCuCCUCgGCgUCGGCCacggCCGAGg -3'
miRNA:   3'- -CCGCGcGGAGgUGgAGCCGGa---GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 88745 0.66 0.745825
Target:  5'- cGGCGCaCg-UCGCCgUGGuCCUCCGAGa -3'
miRNA:   3'- -CCGCGcGgaGGUGGaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 88460 0.7 0.47074
Target:  5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3'
miRNA:   3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5'
14620 5' -63.3 NC_003521.1 + 88434 0.71 0.415799
Target:  5'- uGCGCGUCUCCagggagacgucguccGCCUCGGCgUCgGGc -3'
miRNA:   3'- cCGCGCGGAGG---------------UGGAGCCGgAGgCUc -5'
14620 5' -63.3 NC_003521.1 + 88003 0.66 0.700433
Target:  5'- gGGCGCGCgacgccgagCUguaCCACCUgcCGGUgaCCGAGg -3'
miRNA:   3'- -CCGCGCG---------GA---GGUGGA--GCCGgaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 86696 0.66 0.691181
Target:  5'- uGGCGCuGCCgCCcuuGCC-CGGCCg-CGAGa -3'
miRNA:   3'- -CCGCG-CGGaGG---UGGaGCCGGagGCUC- -5'
14620 5' -63.3 NC_003521.1 + 84694 0.69 0.551045
Target:  5'- uGCGUGCa--CACCUccaggcCGGCCUCCGGu -3'
miRNA:   3'- cCGCGCGgagGUGGA------GCCGGAGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.