miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 117109 0.68 0.606847
Target:  5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3'
miRNA:   3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 234193 0.68 0.606847
Target:  5'- aGCGgGCCaagcgUUCGCgCgCGGCCUCCGAa -3'
miRNA:   3'- cCGCgCGG-----AGGUG-GaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 55018 0.68 0.616234
Target:  5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3'
miRNA:   3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 83772 0.68 0.616234
Target:  5'- uGGCgGCGCCccCCGCCgCGcuCCUCCGAc -3'
miRNA:   3'- -CCG-CGCGGa-GGUGGaGCc-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 118954 0.68 0.616234
Target:  5'- gGGCcaGCGCCcgagacagUCCcuCCUCGGUgUCCGAc -3'
miRNA:   3'- -CCG--CGCGG--------AGGu-GGAGCCGgAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 142590 0.68 0.616234
Target:  5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3'
miRNA:   3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 125480 0.68 0.578802
Target:  5'- cGCGcCGcCCUUCAUCUUGGUCUCCa-- -3'
miRNA:   3'- cCGC-GC-GGAGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 103263 0.69 0.560257
Target:  5'- cGCGUGCaCUgCugCUCGGCCggcgCCGu- -3'
miRNA:   3'- cCGCGCG-GAgGugGAGCCGGa---GGCuc -5'
14620 5' -63.3 NC_003521.1 + 52374 0.69 0.560257
Target:  5'- aGGCGCGUCauccugaCCGCCgucgCGGCCUUCu-- -3'
miRNA:   3'- -CCGCGCGGa------GGUGGa---GCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 81169 0.69 0.51471
Target:  5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3'
miRNA:   3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 200395 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 44758 0.69 0.532767
Target:  5'- -uCGCGCCagUCCACCUcgcCGGCCUuCCGc- -3'
miRNA:   3'- ccGCGCGG--AGGUGGA---GCCGGA-GGCuc -5'
14620 5' -63.3 NC_003521.1 + 54060 0.69 0.532767
Target:  5'- cGC-CGCCUCCGCCgauGCCgCCGAGc -3'
miRNA:   3'- cCGcGCGGAGGUGGagcCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 192110 0.69 0.54188
Target:  5'- --gGCGUCUCCACCUCucccGGCCUCguCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG----CCGGAG--GCUc -5'
14620 5' -63.3 NC_003521.1 + 142248 0.69 0.54188
Target:  5'- cGCGgGCCcgcUCCuCCUCGGCCgacUCGGGc -3'
miRNA:   3'- cCGCgCGG---AGGuGGAGCCGGa--GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 144471 0.69 0.54188
Target:  5'- cGGCGCGCCaCCACCauaaCCUgCGAGg -3'
miRNA:   3'- -CCGCGCGGaGGUGGagccGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 84694 0.69 0.551045
Target:  5'- uGCGUGCa--CACCUccaggcCGGCCUCCGGu -3'
miRNA:   3'- cCGCGCGgagGUGGA------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 52798 0.69 0.551045
Target:  5'- cGGUGCGgCUCCACCUgGaccGCCUUCa-- -3'
miRNA:   3'- -CCGCGCgGAGGUGGAgC---CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 184195 0.66 0.745825
Target:  5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3'
miRNA:   3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.