Results 121 - 140 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 240716 | 0.69 | 0.51471 |
Target: 5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3' miRNA: 3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 128620 | 0.73 | 0.351868 |
Target: 5'- aGCaGCGCCUCCGCUUCGGacacgcgccCCUCCa-- -3' miRNA: 3'- cCG-CGCGGAGGUGGAGCC---------GGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 2355 | 0.73 | 0.323969 |
Target: 5'- gGGcCGCGUCUCCGCC-CcGCCcgCCGAGg -3' miRNA: 3'- -CC-GCGCGGAGGUGGaGcCGGa-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 39811 | 0.73 | 0.323294 |
Target: 5'- gGGCGCcgggcgguccuccGCCgauggcgCCugCUUGGCCUCCGGc -3' miRNA: 3'- -CCGCG-------------CGGa------GGugGAGCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 179094 | 0.73 | 0.317258 |
Target: 5'- uGCGCGCCUCCuguACCagucccgCGGCUUCCGu- -3' miRNA: 3'- cCGCGCGGAGG---UGGa------GCCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 174504 | 0.74 | 0.304149 |
Target: 5'- aGGCG-GCCUCCACggCUUGGaucaCCUCCGGGu -3' miRNA: 3'- -CCGCgCGGAGGUG--GAGCC----GGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 169168 | 0.74 | 0.279191 |
Target: 5'- uGGUGCGCCgcUCCAaCUCGGCCUCgGu- -3' miRNA: 3'- -CCGCGCGG--AGGUgGAGCCGGAGgCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 128373 | 0.76 | 0.214088 |
Target: 5'- gGGCGCGCCcaccagggCCGCCUgGGCCgcCUGAGc -3' miRNA: 3'- -CCGCGCGGa-------GGUGGAgCCGGa-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 91930 | 0.78 | 0.178286 |
Target: 5'- cGGCGCuCCUCgGCgUCGGCCacggCCGAGg -3' miRNA: 3'- -CCGCGcGGAGgUGgAGCCGGa---GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 236374 | 0.72 | 0.381426 |
Target: 5'- aGGCgGUGCCUucagaUCGCCUCGGgcguUCUCCGGGa -3' miRNA: 3'- -CCG-CGCGGA-----GGUGGAGCC----GGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 153177 | 0.72 | 0.389071 |
Target: 5'- gGGCuGCGCCUCCAgCCUgugcgaGGCCUgCGGc -3' miRNA: 3'- -CCG-CGCGGAGGU-GGAg-----CCGGAgGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 209020 | 0.72 | 0.396815 |
Target: 5'- cGGCGCucaaacGCCUCUA-CUCGGCCUUcugCGAGu -3' miRNA: 3'- -CCGCG------CGGAGGUgGAGCCGGAG---GCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 167 | 0.69 | 0.51471 |
Target: 5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3' miRNA: 3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 184369 | 0.7 | 0.479386 |
Target: 5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3' miRNA: 3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 24681 | 0.7 | 0.478518 |
Target: 5'- uGUGCGCCcagguggccuuccUCUGCCgCGGCCUCCGc- -3' miRNA: 3'- cCGCGCGG-------------AGGUGGaGCCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 88460 | 0.7 | 0.47074 |
Target: 5'- gGGCGCGCCgCC-CCggcCGGCC-CCaGAGc -3' miRNA: 3'- -CCGCGCGGaGGuGGa--GCCGGaGG-CUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 13802 | 0.71 | 0.436981 |
Target: 5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3' miRNA: 3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 136368 | 0.71 | 0.418211 |
Target: 5'- aGGaUGCGCugcgacuuccuacaCUCCACCUCGGCCg-CGGGc -3' miRNA: 3'- -CC-GCGCG--------------GAGGUGGAGCCGGagGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 176954 | 0.71 | 0.412596 |
Target: 5'- cGGCGCGCCgccucgUCCACCUgugucagGGCCUUgGAc -3' miRNA: 3'- -CCGCGCGG------AGGUGGAg------CCGGAGgCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 154616 | 0.72 | 0.403868 |
Target: 5'- cGGCGUgccgccgcccuucGCCUCCACCgUGGCC-CgCGAGu -3' miRNA: 3'- -CCGCG-------------CGGAGGUGGaGCCGGaG-GCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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