miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 188467 0.66 0.726965
Target:  5'- -aCGCGCCUCCgagcuacgagcagGCCgUgGGCCUggguccgccgCCGAGa -3'
miRNA:   3'- ccGCGCGGAGG-------------UGG-AgCCGGA----------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 179094 0.73 0.317258
Target:  5'- uGCGCGCCUCCuguACCagucccgCGGCUUCCGu- -3'
miRNA:   3'- cCGCGCGGAGG---UGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 128620 0.73 0.351868
Target:  5'- aGCaGCGCCUCCGCUUCGGacacgcgccCCUCCa-- -3'
miRNA:   3'- cCG-CGCGGAGGUGGAGCC---------GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 154616 0.72 0.403868
Target:  5'- cGGCGUgccgccgcccuucGCCUCCACCgUGGCC-CgCGAGu -3'
miRNA:   3'- -CCGCG-------------CGGAGGUGGaGCCGGaG-GCUC- -5'
14620 5' -63.3 NC_003521.1 + 13802 0.71 0.436981
Target:  5'- aGGCGCGUUUCCACgUCaGCgUCgGGGu -3'
miRNA:   3'- -CCGCGCGGAGGUGgAGcCGgAGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 240716 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 181126 0.69 0.550126
Target:  5'- cGGCGCgGCaguugagguagggCUCCACCU-GGCgUCUGAGc -3'
miRNA:   3'- -CCGCG-CG-------------GAGGUGGAgCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 210367 0.66 0.72787
Target:  5'- aGGUGCGCgUCaucggcacCCUCGGCCgCCuGGa -3'
miRNA:   3'- -CCGCGCGgAGgu------GGAGCCGGaGGcUC- -5'
14620 5' -63.3 NC_003521.1 + 109439 0.66 0.718785
Target:  5'- aGGCuGaCGCCcgUCACCUCGGCgaaCUCCa-- -3'
miRNA:   3'- -CCG-C-GCGGa-GGUGGAGCCG---GAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 18187 0.67 0.680955
Target:  5'- uGCGCGCCUgCCgGCCcuucgaucacaugUCGGCCgCgGAGu -3'
miRNA:   3'- cCGCGCGGA-GG-UGG-------------AGCCGGaGgCUC- -5'
14620 5' -63.3 NC_003521.1 + 181863 0.67 0.681887
Target:  5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3'
miRNA:   3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181173 0.66 0.700433
Target:  5'- aGGCGCGCCagcgUCUGCCgcaccaacGCCUgCGAGc -3'
miRNA:   3'- -CCGCGCGG----AGGUGGagc-----CGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 123911 0.67 0.644434
Target:  5'- cGGCGCGCggcgcuguuCUCCACCaguugcagCGGCg-CCGAu -3'
miRNA:   3'- -CCGCGCG---------GAGGUGGa-------GCCGgaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 117251 0.67 0.652887
Target:  5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3'
miRNA:   3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 179532 0.67 0.653826
Target:  5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3'
miRNA:   3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 56050 0.67 0.663203
Target:  5'- aGGCGCGCguugCC-CCagaucaCGGCCUCCGu- -3'
miRNA:   3'- -CCGCGCGga--GGuGGa-----GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 54060 0.69 0.532767
Target:  5'- cGC-CGCCUCCGCCgauGCCgCCGAGc -3'
miRNA:   3'- cCGcGCGGAGGUGGagcCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 46399 0.67 0.653826
Target:  5'- uGGCGuCGCagaUgCGucCCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGC-GCGg--AgGU--GGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 123344 0.72 0.389071
Target:  5'- cGGCcccaGCGCCgCgGCCgUGGCCUCCGAc -3'
miRNA:   3'- -CCG----CGCGGaGgUGGaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.