miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 44758 0.69 0.532767
Target:  5'- -uCGCGCCagUCCACCUcgcCGGCCUuCCGc- -3'
miRNA:   3'- ccGCGCGG--AGGUGGA---GCCGGA-GGCuc -5'
14620 5' -63.3 NC_003521.1 + 200395 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 81169 0.69 0.51471
Target:  5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3'
miRNA:   3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 220184 0.7 0.505775
Target:  5'- aGGCGC-CCaCCAgCgcgCGGCuCUCCGAGc -3'
miRNA:   3'- -CCGCGcGGaGGUgGa--GCCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 204108 0.7 0.505775
Target:  5'- uGGCgccacuGCGCCUCCACCUgcucgGGCCaggcgCCGGa -3'
miRNA:   3'- -CCG------CGCGGAGGUGGAg----CCGGa----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 123344 0.72 0.389071
Target:  5'- cGGCcccaGCGCCgCgGCCgUGGCCUCCGAc -3'
miRNA:   3'- -CCG----CGCGGaGgUGGaGCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 219809 0.72 0.359103
Target:  5'- uGGCGUuaC-CCGCCUCcaGGcCCUCCGAGa -3'
miRNA:   3'- -CCGCGcgGaGGUGGAG--CC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 148851 0.68 0.619992
Target:  5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3'
miRNA:   3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 36084 0.68 0.624692
Target:  5'- cGGCgGCGCCUCCAucaccacCCUCGccacCCUCCc-- -3'
miRNA:   3'- -CCG-CGCGGAGGU-------GGAGCc---GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 179532 0.67 0.653826
Target:  5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3'
miRNA:   3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 60559 0.67 0.653826
Target:  5'- uGCGCGCCuacuUCCcCCUgCGGUacaCCGAGg -3'
miRNA:   3'- cCGCGCGG----AGGuGGA-GCCGga-GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 46399 0.67 0.653826
Target:  5'- uGGCGuCGCagaUgCGucCCUCGGCCUCCu-- -3'
miRNA:   3'- -CCGC-GCGg--AgGU--GGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 117251 0.67 0.652887
Target:  5'- cGGCGcCGCCgccaucccgCCACCgccgucgUCGGCCguggugCCGGc -3'
miRNA:   3'- -CCGC-GCGGa--------GGUGG-------AGCCGGa-----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 123911 0.67 0.644434
Target:  5'- cGGCGCGCggcgcuguuCUCCACCaguugcagCGGCg-CCGAu -3'
miRNA:   3'- -CCGCGCG---------GAGGUGGa-------GCCGgaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 16889 0.67 0.644434
Target:  5'- cGGC-CGCCUCgACCcccUCGGCCgcgCCu-- -3'
miRNA:   3'- -CCGcGCGGAGgUGG---AGCCGGa--GGcuc -5'
14620 5' -63.3 NC_003521.1 + 66570 0.67 0.635034
Target:  5'- uGGCGCGCCagCGCaaCGuGCgUCUGAGc -3'
miRNA:   3'- -CCGCGCGGagGUGgaGC-CGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 111553 0.67 0.634094
Target:  5'- --gGCGCCUCUACCUCgaggugcGGCUgagCCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG-------CCGGa--GGCUc -5'
14620 5' -63.3 NC_003521.1 + 29357 0.68 0.629393
Target:  5'- uGCGC-CCUgCGCCUCauGGCCUgccccgaccgcgaggCCGAGg -3'
miRNA:   3'- cCGCGcGGAgGUGGAG--CCGGA---------------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 152836 0.68 0.625632
Target:  5'- cGCGCGCCcCCAgauucaccgaguCCUCGcGCCg-CGAGg -3'
miRNA:   3'- cCGCGCGGaGGU------------GGAGC-CGGagGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.