miRNA display CGI


Results 101 - 120 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 36084 0.68 0.624692
Target:  5'- cGGCgGCGCCUCCAucaccacCCUCGccacCCUCCc-- -3'
miRNA:   3'- -CCG-CGCGGAGGU-------GGAGCc---GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 148851 0.68 0.619992
Target:  5'- uGCGUGCCgugcaccgcgCCagcuacgccagccugGCCUCGGCCguggccgacgCCGAGg -3'
miRNA:   3'- cCGCGCGGa---------GG---------------UGGAGCCGGa---------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 142590 0.68 0.616234
Target:  5'- uGGC-CGCCcCCGCCUCcccGCCUCCc-- -3'
miRNA:   3'- -CCGcGCGGaGGUGGAGc--CGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 56050 0.67 0.663203
Target:  5'- aGGCGCGCguugCC-CCagaucaCGGCCUCCGu- -3'
miRNA:   3'- -CCGCGCGga--GGuGGa-----GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 117109 0.68 0.606847
Target:  5'- aGGC-CGCCUCCGCCgcucagccgCcGCCUCCu-- -3'
miRNA:   3'- -CCGcGCGGAGGUGGa--------GcCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 83772 0.68 0.616234
Target:  5'- uGGCgGCGCCccCCGCCgCGcuCCUCCGAc -3'
miRNA:   3'- -CCG-CGCGGa-GGUGGaGCc-GGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 119535 0.66 0.736886
Target:  5'- gGGuUGUGCCgcagcaCCACCUCGGCg-CCGuGc -3'
miRNA:   3'- -CC-GCGCGGa-----GGUGGAGCCGgaGGCuC- -5'
14620 5' -63.3 NC_003521.1 + 58935 0.66 0.736886
Target:  5'- gGGCuGCGCCucgaacUCCACCa-GGCCcUCUGGc -3'
miRNA:   3'- -CCG-CGCGG------AGGUGGagCCGG-AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 113773 0.7 0.47074
Target:  5'- cGGCaccGCGUCUCCAuCCUCGGuuCCUCCc-- -3'
miRNA:   3'- -CCG---CGCGGAGGU-GGAGCC--GGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 205004 0.7 0.478518
Target:  5'- cGGCGCGCaccgccagguucuCgcccacgCCGCCguagUCGGCCUUCGGGu -3'
miRNA:   3'- -CCGCGCG-------------Ga------GGUGG----AGCCGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 43245 0.7 0.496907
Target:  5'- gGGCGCGCUccaUCCGCCUCaucGCCaUCCu-- -3'
miRNA:   3'- -CCGCGCGG---AGGUGGAGc--CGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 204108 0.7 0.505775
Target:  5'- uGGCgccacuGCGCCUCCACCUgcucgGGCCaggcgCCGGa -3'
miRNA:   3'- -CCG------CGCGGAGGUGGAg----CCGGa----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 220184 0.7 0.505775
Target:  5'- aGGCGC-CCaCCAgCgcgCGGCuCUCCGAGc -3'
miRNA:   3'- -CCGCGcGGaGGUgGa--GCCG-GAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 81169 0.69 0.51471
Target:  5'- gGGUGCGCCguuggUCCacgcaccagGCCUCGGCgaUCUGGGc -3'
miRNA:   3'- -CCGCGCGG-----AGG---------UGGAGCCGg-AGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 200395 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 44758 0.69 0.532767
Target:  5'- -uCGCGCCagUCCACCUcgcCGGCCUuCCGc- -3'
miRNA:   3'- ccGCGCGG--AGGUGGA---GCCGGA-GGCuc -5'
14620 5' -63.3 NC_003521.1 + 54060 0.69 0.532767
Target:  5'- cGC-CGCCUCCGCCgauGCCgCCGAGc -3'
miRNA:   3'- cCGcGCGGAGGUGGagcCGGaGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 55018 0.68 0.616234
Target:  5'- aGGCGCaGCg-CCAgCgUCGGCggCUCCGAGa -3'
miRNA:   3'- -CCGCG-CGgaGGU-GgAGCCG--GAGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.