Results 101 - 120 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 137241 | 0.68 | 0.935407 |
Target: 5'- -------gCGCAC-CGGCCGgggccgacGGCGGCa -3' miRNA: 3'- cauguaaaGCGUGaGCCGGU--------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 30515 | 0.68 | 0.935407 |
Target: 5'- --cCAUgUCGCGCUUGGUgAGGaUGGUg -3' miRNA: 3'- cauGUAaAGCGUGAGCCGgUCC-GCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 194140 | 0.68 | 0.939662 |
Target: 5'- -aGCG-UUCGCAucuccacCUCGG-CGGGCGGUu -3' miRNA: 3'- caUGUaAAGCGU-------GAGCCgGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 134153 | 0.68 | 0.940123 |
Target: 5'- cGUGCAUcucgUCGCACa-GG-UAGGUGGCc -3' miRNA: 3'- -CAUGUAa---AGCGUGagCCgGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 218610 | 0.68 | 0.930966 |
Target: 5'- gGUACGguucggccgccagCGCGCggcgguaagCGGCCAcggccGGCGGCg -3' miRNA: 3'- -CAUGUaaa----------GCGUGa--------GCCGGU-----CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 102786 | 0.68 | 0.925285 |
Target: 5'- -cGCgAUgaCGCGCcggCGGCCgccagcucGGGCGGCa -3' miRNA: 3'- caUG-UAaaGCGUGa--GCCGG--------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 153013 | 0.69 | 0.880613 |
Target: 5'- -cGCGgaugUCGCGCUCcuggcccaGGCCgcccgagaccgacgAGGCGGCc -3' miRNA: 3'- caUGUaa--AGCGUGAG--------CCGG--------------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 74578 | 0.69 | 0.889436 |
Target: 5'- -aGCAcggCcCGCUC-GCCGGGCGGCa -3' miRNA: 3'- caUGUaaaGcGUGAGcCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 127652 | 0.69 | 0.882681 |
Target: 5'- -gGCAccUCGCGgcccauCUUGGCCgcgagcAGGCGGCg -3' miRNA: 3'- caUGUaaAGCGU------GAGCCGG------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 110884 | 0.69 | 0.889436 |
Target: 5'- -gGCAgaacugCGCcguCUCGGCCAGGUGuucGCg -3' miRNA: 3'- caUGUaaa---GCGu--GAGCCGGUCCGC---CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 219443 | 0.69 | 0.882681 |
Target: 5'- -aGCGc-UCGCacaGCUCGGUCAGcuGCGGCa -3' miRNA: 3'- caUGUaaAGCG---UGAGCCGGUC--CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 226890 | 0.69 | 0.882681 |
Target: 5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3' miRNA: 3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 128139 | 0.69 | 0.882681 |
Target: 5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3' miRNA: 3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 224411 | 0.69 | 0.889436 |
Target: 5'- gGUACAccUCGC---CGGCCAGGCGcuGCg -3' miRNA: 3'- -CAUGUaaAGCGugaGCCGGUCCGC--CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 209541 | 0.69 | 0.895973 |
Target: 5'- -cGCGguuaUGCGCcCGGCgGGGUGGCg -3' miRNA: 3'- caUGUaaa-GCGUGaGCCGgUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 225595 | 0.69 | 0.90838 |
Target: 5'- -gGCGgccUCGCGCUCGGCCGccuGCaGCc -3' miRNA: 3'- caUGUaa-AGCGUGAGCCGGUc--CGcCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 152558 | 0.69 | 0.914244 |
Target: 5'- -gACAgccaGCACUCGGUCAaGCuGGCg -3' miRNA: 3'- caUGUaaagCGUGAGCCGGUcCG-CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 174257 | 0.69 | 0.90838 |
Target: 5'- -cGCAcgUUGCGCUggCGcGCCAGGuCGGUg -3' miRNA: 3'- caUGUaaAGCGUGA--GC-CGGUCC-GCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 204931 | 0.69 | 0.889436 |
Target: 5'- aGUGCGUgccgUgGCAC-CGGCCAGcGCGa- -3' miRNA: 3'- -CAUGUAa---AgCGUGaGCCGGUC-CGCcg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 153109 | 0.69 | 0.914244 |
Target: 5'- -cGCcgggCGCGCgcgaCGGCagCAGGCGGCu -3' miRNA: 3'- caUGuaaaGCGUGa---GCCG--GUCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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