miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 143416 0.69 0.901667
Target:  5'- -aGC-UUUCGC-CUgGGCCAGGgcuccuuCGGCg -3'
miRNA:   3'- caUGuAAAGCGuGAgCCGGUCC-------GCCG- -5'
14621 5' -54.9 NC_003521.1 + 209541 0.69 0.895973
Target:  5'- -cGCGguuaUGCGCcCGGCgGGGUGGCg -3'
miRNA:   3'- caUGUaaa-GCGUGaGCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 224411 0.69 0.889436
Target:  5'- gGUACAccUCGC---CGGCCAGGCGcuGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGGUCCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 128139 0.69 0.882681
Target:  5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3'
miRNA:   3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 153013 0.69 0.880613
Target:  5'- -cGCGgaugUCGCGCUCcuggcccaGGCCgcccgagaccgacgAGGCGGCc -3'
miRNA:   3'- caUGUaa--AGCGUGAG--------CCGG--------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 226890 0.69 0.882681
Target:  5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3'
miRNA:   3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 219443 0.69 0.882681
Target:  5'- -aGCGc-UCGCacaGCUCGGUCAGcuGCGGCa -3'
miRNA:   3'- caUGUaaAGCG---UGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 36181 0.69 0.902289
Target:  5'- -gGCGUgcccaCGCACcUGGCCGaGCGGCu -3'
miRNA:   3'- caUGUAaa---GCGUGaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 115836 0.69 0.902289
Target:  5'- -aGCAgg-CGCugGCUCaGgCGGGCGGCg -3'
miRNA:   3'- caUGUaaaGCG--UGAGcCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 76495 0.69 0.902289
Target:  5'- --cCGUgaCGUAgUCGGCCAGaGCGGg -3'
miRNA:   3'- cauGUAaaGCGUgAGCCGGUC-CGCCg -5'
14621 5' -54.9 NC_003521.1 + 74578 0.69 0.889436
Target:  5'- -aGCAcggCcCGCUC-GCCGGGCGGCa -3'
miRNA:   3'- caUGUaaaGcGUGAGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 174257 0.69 0.90838
Target:  5'- -cGCAcgUUGCGCUggCGcGCCAGGuCGGUg -3'
miRNA:   3'- caUGUaaAGCGUGA--GC-CGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 127652 0.69 0.882681
Target:  5'- -gGCAccUCGCGgcccauCUUGGCCgcgagcAGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGU------GAGCCGG------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 44737 0.69 0.900418
Target:  5'- -cGCAUUUCGUGCUgcuggacgccgagaCGGaCCgcggaAGGCGGCc -3'
miRNA:   3'- caUGUAAAGCGUGA--------------GCC-GG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 153109 0.69 0.914244
Target:  5'- -cGCcgggCGCGCgcgaCGGCagCAGGCGGCu -3'
miRNA:   3'- caUGuaaaGCGUGa---GCCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 225595 0.69 0.90838
Target:  5'- -gGCGgccUCGCGCUCGGCCGccuGCaGCc -3'
miRNA:   3'- caUGUaa-AGCGUGAGCCGGUc--CGcCG- -5'
14621 5' -54.9 NC_003521.1 + 98866 0.69 0.90838
Target:  5'- gGUACugcuacCGcCGCUCGuGCUAGGgGGCg -3'
miRNA:   3'- -CAUGuaaa--GC-GUGAGC-CGGUCCgCCG- -5'
14621 5' -54.9 NC_003521.1 + 34389 0.69 0.90838
Target:  5'- -aGCAgguggUgGCGCUCgGGCCAGGUgaggaucagcugGGCg -3'
miRNA:   3'- caUGUaa---AgCGUGAG-CCGGUCCG------------CCG- -5'
14621 5' -54.9 NC_003521.1 + 114419 0.69 0.902289
Target:  5'- ------aUCGCGCagGGCCGagaccuguGGCGGCa -3'
miRNA:   3'- cauguaaAGCGUGagCCGGU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 110884 0.69 0.889436
Target:  5'- -gGCAgaacugCGCcguCUCGGCCAGGUGuucGCg -3'
miRNA:   3'- caUGUaaa---GCGu--GAGCCGGUCCGC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.