Results 101 - 120 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 102786 | 0.68 | 0.925285 |
Target: 5'- -cGCgAUgaCGCGCcggCGGCCgccagcucGGGCGGCa -3' miRNA: 3'- caUG-UAaaGCGUGa--GCCGG--------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 113104 | 0.68 | 0.930461 |
Target: 5'- gGUGCAgga-GCgGCUCucgGGCCAGGUGcGCg -3' miRNA: 3'- -CAUGUaaagCG-UGAG---CCGGUCCGC-CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 166657 | 0.68 | 0.940123 |
Target: 5'- -cGCGg--CGCAg-CGGCCA-GCGGCa -3' miRNA: 3'- caUGUaaaGCGUgaGCCGGUcCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 134153 | 0.68 | 0.940123 |
Target: 5'- cGUGCAUcucgUCGCACa-GG-UAGGUGGCc -3' miRNA: 3'- -CAUGUAa---AGCGUGagCCgGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 24235 | 0.67 | 0.963721 |
Target: 5'- gGUugGgca-GCGggCGGUCGGGCGGUa -3' miRNA: 3'- -CAugUaaagCGUgaGCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 77713 | 0.67 | 0.944611 |
Target: 5'- -gGCGg--CGUugUUGGCgAcGGCGGCc -3' miRNA: 3'- caUGUaaaGCGugAGCCGgU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 160769 | 0.67 | 0.963721 |
Target: 5'- ----cUUUCGCGCgugCcGCC-GGCGGCa -3' miRNA: 3'- cauguAAAGCGUGa--GcCGGuCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 83480 | 0.67 | 0.963721 |
Target: 5'- -aGCAUUUCGCGgUCcuGCCcguaGCGGCu -3' miRNA: 3'- caUGUAAAGCGUgAGc-CGGuc--CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 168530 | 0.67 | 0.963721 |
Target: 5'- -aGCAg---GCuggCGGCCAGcGCGGCg -3' miRNA: 3'- caUGUaaagCGugaGCCGGUC-CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 78800 | 0.67 | 0.960332 |
Target: 5'- -cGCAggUCG-ACgagCGGCCcuGGUGGCg -3' miRNA: 3'- caUGUaaAGCgUGa--GCCGGu-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 72830 | 0.67 | 0.960332 |
Target: 5'- -aGCAggcucacCGCGa-CGGCCugGGGCGGCg -3' miRNA: 3'- caUGUaaa----GCGUgaGCCGG--UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 178822 | 0.67 | 0.960332 |
Target: 5'- gGUAUc--UCGUgaACUCGcUCAGGCGGCg -3' miRNA: 3'- -CAUGuaaAGCG--UGAGCcGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 27268 | 0.67 | 0.956731 |
Target: 5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3' miRNA: 3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 148424 | 0.67 | 0.952912 |
Target: 5'- gGUGCGggcggcCGCGCcggCGGCUccagGGGUGGCc -3' miRNA: 3'- -CAUGUaaa---GCGUGa--GCCGG----UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 43483 | 0.67 | 0.952912 |
Target: 5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3' miRNA: 3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 226269 | 0.67 | 0.952912 |
Target: 5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3' miRNA: 3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 187870 | 0.67 | 0.948874 |
Target: 5'- uUGCAUggCGguCaccaccucgggCGGCaCGGGCGGCg -3' miRNA: 3'- cAUGUAaaGCguGa----------GCCG-GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 105644 | 0.67 | 0.948874 |
Target: 5'- uGUGCGUgaaGCccaGCUCGGgggUGGGCGGCa -3' miRNA: 3'- -CAUGUAaagCG---UGAGCCg--GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 236026 | 0.67 | 0.944611 |
Target: 5'- -aACAUgaUGCACUucgUGGUCAGGCaGCu -3' miRNA: 3'- caUGUAaaGCGUGA---GCCGGUCCGcCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 213053 | 0.67 | 0.959982 |
Target: 5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3' miRNA: 3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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