miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 153109 0.69 0.914244
Target:  5'- -cGCcgggCGCGCgcgaCGGCagCAGGCGGCu -3'
miRNA:   3'- caUGuaaaGCGUGa---GCCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 152558 0.69 0.914244
Target:  5'- -gACAgccaGCACUCGGUCAaGCuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAGCCGGUcCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 115806 0.68 0.919879
Target:  5'- -aGCAgucCGcCGCUCaGGCgCGGGUGGCu -3'
miRNA:   3'- caUGUaaaGC-GUGAG-CCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 221902 0.68 0.919879
Target:  5'- -gACGUgaaUCGaaacCUCgGGCCAGGCGuGCg -3'
miRNA:   3'- caUGUAa--AGCgu--GAG-CCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 151494 0.68 0.922069
Target:  5'- gGUGCGacaUCGCggacggugaacuaccGCcgUCGGCCagAGGCGGCg -3'
miRNA:   3'- -CAUGUaa-AGCG---------------UG--AGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 44060 0.68 0.925285
Target:  5'- -cGCgg-UCGCGC-CGGCCGgGGCaGCa -3'
miRNA:   3'- caUGuaaAGCGUGaGCCGGU-CCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 110744 0.68 0.925285
Target:  5'- -gGCAgUUC-CACUCGGCCAGcGagagcaGGCc -3'
miRNA:   3'- caUGUaAAGcGUGAGCCGGUC-Cg-----CCG- -5'
14621 5' -54.9 NC_003521.1 + 102786 0.68 0.925285
Target:  5'- -cGCgAUgaCGCGCcggCGGCCgccagcucGGGCGGCa -3'
miRNA:   3'- caUG-UAaaGCGUGa--GCCGG--------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 115649 0.68 0.928933
Target:  5'- cGUGCGUgucggCGCcccagugGCgggugaagaaggCGGCCAGGCGGa -3'
miRNA:   3'- -CAUGUAaa---GCG-------UGa-----------GCCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 117390 0.68 0.930461
Target:  5'- gGUGCGgcaCGCGCUgugcUGGCaccggguggaGGGCGGCa -3'
miRNA:   3'- -CAUGUaaaGCGUGA----GCCGg---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 113104 0.68 0.930461
Target:  5'- gGUGCAgga-GCgGCUCucgGGCCAGGUGcGCg -3'
miRNA:   3'- -CAUGUaaagCG-UGAG---CCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 97618 0.68 0.930461
Target:  5'- aGUGCAcgucgUCGUGCUCaGGCuCGacguucgcGGCGGCg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAG-CCG-GU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197162 0.68 0.930461
Target:  5'- ---aGUUcCGCGCUgGGCCuggcagggcuggAGGCGGUg -3'
miRNA:   3'- caugUAAaGCGUGAgCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 218610 0.68 0.930966
Target:  5'- gGUACGguucggccgccagCGCGCggcgguaagCGGCCAcggccGGCGGCg -3'
miRNA:   3'- -CAUGUaaa----------GCGUGa--------GCCGGU-----CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 70525 0.68 0.935407
Target:  5'- -gACGUgaccgccUCGCGCUCGGCCGGcCGa- -3'
miRNA:   3'- caUGUAa------AGCGUGAGCCGGUCcGCcg -5'
14621 5' -54.9 NC_003521.1 + 137241 0.68 0.935407
Target:  5'- -------gCGCAC-CGGCCGgggccgacGGCGGCa -3'
miRNA:   3'- cauguaaaGCGUGaGCCGGU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 30515 0.68 0.935407
Target:  5'- --cCAUgUCGCGCUUGGUgAGGaUGGUg -3'
miRNA:   3'- cauGUAaAGCGUGAGCCGgUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 109584 0.68 0.935407
Target:  5'- -cGCGUgaagugCGCcaGCUCGGCCA-GCGaGCa -3'
miRNA:   3'- caUGUAaa----GCG--UGAGCCGGUcCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 167665 0.68 0.935407
Target:  5'- --cCAggUCGCA---GGCCgAGGCGGCg -3'
miRNA:   3'- cauGUaaAGCGUgagCCGG-UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 194140 0.68 0.939662
Target:  5'- -aGCG-UUCGCAucuccacCUCGG-CGGGCGGUu -3'
miRNA:   3'- caUGUaAAGCGU-------GAGCCgGUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.