miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 194140 0.68 0.939662
Target:  5'- -aGCG-UUCGCAucuccacCUCGG-CGGGCGGUu -3'
miRNA:   3'- caUGUaAAGCGU-------GAGCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86683 0.68 0.940123
Target:  5'- -cGCGUcgUCGUAUcuggCgGGCCGcGGCGGCg -3'
miRNA:   3'- caUGUAa-AGCGUGa---G-CCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166657 0.68 0.940123
Target:  5'- -cGCGg--CGCAg-CGGCCA-GCGGCa -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 134153 0.68 0.940123
Target:  5'- cGUGCAUcucgUCGCACa-GG-UAGGUGGCc -3'
miRNA:   3'- -CAUGUAa---AGCGUGagCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 111094 0.67 0.944611
Target:  5'- -cGCGga-CGCGCUCGGCgucgaCGGGCcGCg -3'
miRNA:   3'- caUGUaaaGCGUGAGCCG-----GUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 236026 0.67 0.944611
Target:  5'- -aACAUgaUGCACUucgUGGUCAGGCaGCu -3'
miRNA:   3'- caUGUAaaGCGUGA---GCCGGUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 77713 0.67 0.944611
Target:  5'- -gGCGg--CGUugUUGGCgAcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGugAGCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 169317 0.67 0.948874
Target:  5'- -gGCGUcggUCGCAgCgucgCGGCCGGcGUGGUu -3'
miRNA:   3'- caUGUAa--AGCGU-Ga---GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 105644 0.67 0.948874
Target:  5'- uGUGCGUgaaGCccaGCUCGGgggUGGGCGGCa -3'
miRNA:   3'- -CAUGUAaagCG---UGAGCCg--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 187870 0.67 0.948874
Target:  5'- uUGCAUggCGguCaccaccucgggCGGCaCGGGCGGCg -3'
miRNA:   3'- cAUGUAaaGCguGa----------GCCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 186651 0.67 0.948874
Target:  5'- -gACG--UCGCGCggcggUGGCgGaGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa----GCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87718 0.67 0.948874
Target:  5'- cUGCcg-UCGCGCgc-GCCcGGCGGCg -3'
miRNA:   3'- cAUGuaaAGCGUGagcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 207561 0.67 0.948874
Target:  5'- cUGCAcgaUCGCGC-CGGCCugcuGGCGuGUg -3'
miRNA:   3'- cAUGUaa-AGCGUGaGCCGGu---CCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 43483 0.67 0.952912
Target:  5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 36419 0.67 0.952912
Target:  5'- cGUGgAUUUCGCGgUCGGa-GGGCcGCg -3'
miRNA:   3'- -CAUgUAAAGCGUgAGCCggUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 226269 0.67 0.952912
Target:  5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3'
miRNA:   3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 148424 0.67 0.952912
Target:  5'- gGUGCGggcggcCGCGCcggCGGCUccagGGGUGGCc -3'
miRNA:   3'- -CAUGUaaa---GCGUGa--GCCGG----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 93038 0.67 0.95523
Target:  5'- gGUGCAggUgGCGCUgGGCUucaacaccgugguGGUGGCc -3'
miRNA:   3'- -CAUGUaaAgCGUGAgCCGGu------------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 122623 0.67 0.956359
Target:  5'- -gGCGgccgCGCGCUCGGCgGccccgacuuugccGGCGGg -3'
miRNA:   3'- caUGUaaa-GCGUGAGCCGgU-------------CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 27268 0.67 0.956731
Target:  5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3'
miRNA:   3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.