miRNA display CGI


Results 121 - 140 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 206302 0.67 0.956731
Target:  5'- -cGCucg-CGCGuCUCGGCCc-GCGGCc -3'
miRNA:   3'- caUGuaaaGCGU-GAGCCGGucCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 95179 0.67 0.956731
Target:  5'- -gGCAccUCGCGCUCGGCgCGGaacuccacgccCGGCa -3'
miRNA:   3'- caUGUaaAGCGUGAGCCG-GUCc----------GCCG- -5'
14621 5' -54.9 NC_003521.1 + 178241 0.67 0.956731
Target:  5'- -gGCuc-UCGCACU-GG-UAGGCGGCg -3'
miRNA:   3'- caUGuaaAGCGUGAgCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 112732 0.67 0.959982
Target:  5'- cUGCuggagUCGCGCUuccagcgCGaGCCcauGGGCGGCa -3'
miRNA:   3'- cAUGuaa--AGCGUGA-------GC-CGG---UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 213053 0.67 0.959982
Target:  5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3'
miRNA:   3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 178822 0.67 0.960332
Target:  5'- gGUAUc--UCGUgaACUCGcUCAGGCGGCg -3'
miRNA:   3'- -CAUGuaaAGCG--UGAGCcGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 72830 0.67 0.960332
Target:  5'- -aGCAggcucacCGCGa-CGGCCugGGGCGGCg -3'
miRNA:   3'- caUGUaaa----GCGUgaGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 150935 0.67 0.960332
Target:  5'- gGUGCGgguUUUCaCACaCcGCCAGGUGGCg -3'
miRNA:   3'- -CAUGU---AAAGcGUGaGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 78800 0.67 0.960332
Target:  5'- -cGCAggUCG-ACgagCGGCCcuGGUGGCg -3'
miRNA:   3'- caUGUaaAGCgUGa--GCCGGu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 208930 0.67 0.963721
Target:  5'- -cGCAgUUCcuGUGCcgCGGCCuGGCGGUg -3'
miRNA:   3'- caUGUaAAG--CGUGa-GCCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86316 0.67 0.963721
Target:  5'- -gGCGUgaUUCugGCACgUCaGCCGGGUGGUg -3'
miRNA:   3'- caUGUA--AAG--CGUG-AGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 101598 0.67 0.963721
Target:  5'- cGUACAggUgGUagcucaggACgUCGGCCAGGgccCGGCg -3'
miRNA:   3'- -CAUGUaaAgCG--------UG-AGCCGGUCC---GCCG- -5'
14621 5' -54.9 NC_003521.1 + 160769 0.67 0.963721
Target:  5'- ----cUUUCGCGCgugCcGCC-GGCGGCa -3'
miRNA:   3'- cauguAAAGCGUGa--GcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 83480 0.67 0.963721
Target:  5'- -aGCAUUUCGCGgUCcuGCCcguaGCGGCu -3'
miRNA:   3'- caUGUAAAGCGUgAGc-CGGuc--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 168530 0.67 0.963721
Target:  5'- -aGCAg---GCuggCGGCCAGcGCGGCg -3'
miRNA:   3'- caUGUaaagCGugaGCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 88530 0.67 0.963721
Target:  5'- cGUGCAgg-CGCACcgaaaCGGCCuccucgGGGCagGGCa -3'
miRNA:   3'- -CAUGUaaaGCGUGa----GCCGG------UCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 85395 0.67 0.963721
Target:  5'- -aGCGgc-UGCGCUUGGCC-GGCaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAGCCGGuCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 42198 0.67 0.963721
Target:  5'- -gGCGUUUC-C-CUgGGCCA-GCGGCu -3'
miRNA:   3'- caUGUAAAGcGuGAgCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 24235 0.67 0.963721
Target:  5'- gGUugGgca-GCGggCGGUCGGGCGGUa -3'
miRNA:   3'- -CAugUaaagCGUgaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 128452 0.67 0.963721
Target:  5'- --------aGCGCUCGcCCAGGCGGa -3'
miRNA:   3'- cauguaaagCGUGAGCcGGUCCGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.