miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 85395 0.67 0.963721
Target:  5'- -aGCGgc-UGCGCUUGGCC-GGCaGCa -3'
miRNA:   3'- caUGUaaaGCGUGAGCCGGuCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 85738 0.66 0.975006
Target:  5'- cUGCAg--CGCcgcgaACUUGGCCaugagcgAGGUGGCc -3'
miRNA:   3'- cAUGUaaaGCG-----UGAGCCGG-------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 85900 0.66 0.975256
Target:  5'- -gACAUgaccCGacuCUUGGUCAGGuCGGCg -3'
miRNA:   3'- caUGUAaa--GCgu-GAGCCGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 86162 0.74 0.661401
Target:  5'- -aGCGUcUCGCugccggcCUCGGCCA-GCGGCa -3'
miRNA:   3'- caUGUAaAGCGu------GAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86316 0.67 0.963721
Target:  5'- -gGCGUgaUUCugGCACgUCaGCCGGGUGGUg -3'
miRNA:   3'- caUGUA--AAG--CGUG-AGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86683 0.68 0.940123
Target:  5'- -cGCGUcgUCGUAUcuggCgGGCCGcGGCGGCg -3'
miRNA:   3'- caUGUAa-AGCGUGa---G-CCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87718 0.67 0.948874
Target:  5'- cUGCcg-UCGCGCgc-GCCcGGCGGCg -3'
miRNA:   3'- cAUGuaaAGCGUGagcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87870 0.66 0.966903
Target:  5'- -cGCAg---GCGCU-GGCCAGGCcguuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAgCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 88530 0.67 0.963721
Target:  5'- cGUGCAgg-CGCACcgaaaCGGCCuccucgGGGCagGGCa -3'
miRNA:   3'- -CAUGUaaaGCGUGa----GCCGG------UCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 89898 0.7 0.87358
Target:  5'- -------cCGCGCUCGGCCcacacgccguggaaGGGCGcGCa -3'
miRNA:   3'- cauguaaaGCGUGAGCCGG--------------UCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 90063 0.66 0.966903
Target:  5'- -cGCGag-CGCACacgCGGgCGGGCGcGCa -3'
miRNA:   3'- caUGUaaaGCGUGa--GCCgGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 91982 0.73 0.710996
Target:  5'- gGUGCAcggcaCGCAcCUCGGCCgaGGGCaGGCg -3'
miRNA:   3'- -CAUGUaaa--GCGU-GAGCCGG--UCCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 93038 0.67 0.95523
Target:  5'- gGUGCAggUgGCGCUgGGCUucaacaccgugguGGUGGCc -3'
miRNA:   3'- -CAUGUaaAgCGUGAgCCGGu------------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 95179 0.67 0.956731
Target:  5'- -gGCAccUCGCGCUCGGCgCGGaacuccacgccCGGCa -3'
miRNA:   3'- caUGUaaAGCGUGAGCCG-GUCc----------GCCG- -5'
14621 5' -54.9 NC_003521.1 + 96637 0.7 0.86115
Target:  5'- uUGCcgUUCuccaGCGCgCGG-CAGGCGGCg -3'
miRNA:   3'- cAUGuaAAG----CGUGaGCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 97618 0.68 0.930461
Target:  5'- aGUGCAcgucgUCGUGCUCaGGCuCGacguucgcGGCGGCg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAG-CCG-GU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98209 0.66 0.969882
Target:  5'- ------gUUGCugUCGGCgGGcaGCGGCg -3'
miRNA:   3'- cauguaaAGCGugAGCCGgUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98476 0.7 0.875712
Target:  5'- -gGCGgc-CGCGg-CGGCCGuGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98523 0.66 0.977431
Target:  5'- -gACGcg-CGCgGCUgGGCCGcugcagcGGCGGCg -3'
miRNA:   3'- caUGUaaaGCG-UGAgCCGGU-------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98866 0.69 0.90838
Target:  5'- gGUACugcuacCGcCGCUCGuGCUAGGgGGCg -3'
miRNA:   3'- -CAUGuaaa--GC-GUGAGC-CGGUCCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.