Results 81 - 100 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 112420 | 0.66 | 0.96721 |
Target: 5'- -cGCcUUUCGgACcgacgcccgcucaggCGGcCCAGGCGGCc -3' miRNA: 3'- caUGuAAAGCgUGa--------------GCC-GGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 112732 | 0.67 | 0.959982 |
Target: 5'- cUGCuggagUCGCGCUuccagcgCGaGCCcauGGGCGGCa -3' miRNA: 3'- cAUGuaa--AGCGUGA-------GC-CGG---UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 113104 | 0.68 | 0.930461 |
Target: 5'- gGUGCAgga-GCgGCUCucgGGCCAGGUGcGCg -3' miRNA: 3'- -CAUGUaaagCG-UGAG---CCGGUCCGC-CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 114419 | 0.69 | 0.902289 |
Target: 5'- ------aUCGCGCagGGCCGagaccuguGGCGGCa -3' miRNA: 3'- cauguaaAGCGUGagCCGGU--------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 115649 | 0.68 | 0.928933 |
Target: 5'- cGUGCGUgucggCGCcccagugGCgggugaagaaggCGGCCAGGCGGa -3' miRNA: 3'- -CAUGUAaa---GCG-------UGa-----------GCCGGUCCGCCg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 115806 | 0.68 | 0.919879 |
Target: 5'- -aGCAgucCGcCGCUCaGGCgCGGGUGGCu -3' miRNA: 3'- caUGUaaaGC-GUGAG-CCG-GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 115836 | 0.69 | 0.902289 |
Target: 5'- -aGCAgg-CGCugGCUCaGgCGGGCGGCg -3' miRNA: 3'- caUGUaaaGCG--UGAGcCgGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 116604 | 0.66 | 0.969882 |
Target: 5'- cUGCAagUCGCug-CGGCCcgacaAGGUGGUg -3' miRNA: 3'- cAUGUaaAGCGugaGCCGG-----UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 117027 | 0.66 | 0.977431 |
Target: 5'- -cGCGagUCGUACgucaaGGCCaguguuucgcccgAGGCGGCc -3' miRNA: 3'- caUGUaaAGCGUGag---CCGG-------------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 117212 | 0.71 | 0.812893 |
Target: 5'- gGUGgAgaugUCGCACccgcugaCGGCCGcGGCGGCu -3' miRNA: 3'- -CAUgUaa--AGCGUGa------GCCGGU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 117390 | 0.68 | 0.930461 |
Target: 5'- gGUGCGgcaCGCGCUgugcUGGCaccggguggaGGGCGGCa -3' miRNA: 3'- -CAUGUaaaGCGUGA----GCCGg---------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 117511 | 0.66 | 0.977664 |
Target: 5'- cGUACGgcgguaUGCACUCcgugGGCUAcgacgaccuGGCGGCa -3' miRNA: 3'- -CAUGUaaa---GCGUGAG----CCGGU---------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 120847 | 0.73 | 0.710996 |
Target: 5'- gGUGcCAUgcUGgACUCGGCCuugAGGCGGCc -3' miRNA: 3'- -CAU-GUAaaGCgUGAGCCGG---UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 121801 | 0.74 | 0.641346 |
Target: 5'- gGUAC---UUGCGCUCGGCCGuGGUGGg -3' miRNA: 3'- -CAUGuaaAGCGUGAGCCGGU-CCGCCg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 122623 | 0.67 | 0.956359 |
Target: 5'- -gGCGgccgCGCGCUCGGCgGccccgacuuugccGGCGGg -3' miRNA: 3'- caUGUaaa-GCGUGAGCCGgU-------------CCGCCg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 123678 | 0.72 | 0.786535 |
Target: 5'- -aGCcgg-CGCGCUgCGGCguGGCGGUg -3' miRNA: 3'- caUGuaaaGCGUGA-GCCGguCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 124033 | 0.66 | 0.972664 |
Target: 5'- -cGCGgc-CGUAgaCGGCCAgcgugccgcGGCGGCg -3' miRNA: 3'- caUGUaaaGCGUgaGCCGGU---------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 124451 | 0.74 | 0.671398 |
Target: 5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3' miRNA: 3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 126128 | 0.71 | 0.828865 |
Target: 5'- cUGCAga-CGCGacccacgUagGGCCAGGCGGCg -3' miRNA: 3'- cAUGUaaaGCGU-------GagCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 126407 | 0.73 | 0.710996 |
Target: 5'- -cACAggUCucggcccuGCGCgauggCGGCCAGGCGGUc -3' miRNA: 3'- caUGUaaAG--------CGUGa----GCCGGUCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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