miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 126487 0.66 0.966903
Target:  5'- -cACGUcUUCGaCGaagaGcGCCAGGCGGCa -3'
miRNA:   3'- caUGUA-AAGC-GUgag-C-CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 127129 0.66 0.972664
Target:  5'- -cGCGUcgUGCACcu--CCAGGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGagccGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 127541 0.71 0.821374
Target:  5'- uGUGCGgcggcaGCACgccgUCGGCCAGGUgcucGGCg -3'
miRNA:   3'- -CAUGUaaag--CGUG----AGCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 127652 0.69 0.882681
Target:  5'- -gGCAccUCGCGgcccauCUUGGCCgcgagcAGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGU------GAGCCGG------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 128139 0.69 0.882681
Target:  5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3'
miRNA:   3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 128452 0.67 0.963721
Target:  5'- --------aGCGCUCGcCCAGGCGGa -3'
miRNA:   3'- cauguaaagCGUGAGCcGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 131086 0.74 0.651381
Target:  5'- -cGCGgcUCGCGCgggcuccggaCGGCgGGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa---------GCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 134153 0.68 0.940123
Target:  5'- cGUGCAUcucgUCGCACa-GG-UAGGUGGCc -3'
miRNA:   3'- -CAUGUAa---AGCGUGagCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 136622 0.7 0.845793
Target:  5'- cUGCAgca-GCACguaaUCGGCCacgggcgcgGGGCGGCg -3'
miRNA:   3'- cAUGUaaagCGUG----AGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 137241 0.68 0.935407
Target:  5'- -------gCGCAC-CGGCCGgggccgacGGCGGCa -3'
miRNA:   3'- cauguaaaGCGUGaGCCGGU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 139193 0.66 0.977664
Target:  5'- -aACGUgaCGCGCUaccaGcGCCGGGCccuGGCc -3'
miRNA:   3'- caUGUAaaGCGUGAg---C-CGGUCCG---CCG- -5'
14621 5' -54.9 NC_003521.1 + 139793 0.66 0.975256
Target:  5'- -gGCG--UCGCcCUCGGC--GGUGGCg -3'
miRNA:   3'- caUGUaaAGCGuGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 140856 0.7 0.86115
Target:  5'- -aGCGcUUCGCGguCUCGGCCgAGGCGccGCc -3'
miRNA:   3'- caUGUaAAGCGU--GAGCCGG-UCCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 141183 0.66 0.966903
Target:  5'- uGUGCuccuUUUCGCGggUGGCCGuGGCGcuGCg -3'
miRNA:   3'- -CAUGu---AAAGCGUgaGCCGGU-CCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 143416 0.69 0.901667
Target:  5'- -aGC-UUUCGC-CUgGGCCAGGgcuccuuCGGCg -3'
miRNA:   3'- caUGuAAAGCGuGAgCCGGUCC-------GCCG- -5'
14621 5' -54.9 NC_003521.1 + 145257 0.75 0.631304
Target:  5'- cUGCAgggCGCcucCUCGGCCucGGCGGCc -3'
miRNA:   3'- cAUGUaaaGCGu--GAGCCGGu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 145568 0.66 0.977664
Target:  5'- cGUGCAgaaCGUGCUgCGGCgGcacgacgcGGCGGCc -3'
miRNA:   3'- -CAUGUaaaGCGUGA-GCCGgU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148424 0.67 0.952912
Target:  5'- gGUGCGggcggcCGCGCcggCGGCUccagGGGUGGCc -3'
miRNA:   3'- -CAUGUaaa---GCGUGa--GCCGG----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148614 0.79 0.396042
Target:  5'- -cACAgcgcUCGuCGCgCGGCCGGGCGGCg -3'
miRNA:   3'- caUGUaa--AGC-GUGaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 150935 0.67 0.960332
Target:  5'- gGUGCGgguUUUCaCACaCcGCCAGGUGGCg -3'
miRNA:   3'- -CAUGU---AAAGcGUGaGcCGGUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.