miRNA display CGI


Results 121 - 140 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 150959 0.76 0.551583
Target:  5'- cGUGCAg-UCGCGCgacgCGGCgCuGGCGGCc -3'
miRNA:   3'- -CAUGUaaAGCGUGa---GCCG-GuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 151308 0.74 0.671398
Target:  5'- -gACGcg-CGCAaggCGGCCAGGCGGg -3'
miRNA:   3'- caUGUaaaGCGUga-GCCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 151494 0.68 0.922069
Target:  5'- gGUGCGacaUCGCggacggugaacuaccGCcgUCGGCCagAGGCGGCg -3'
miRNA:   3'- -CAUGUaa-AGCG---------------UG--AGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 152558 0.69 0.914244
Target:  5'- -gACAgccaGCACUCGGUCAaGCuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAGCCGGUcCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 152594 0.66 0.971018
Target:  5'- aGUACAcgaUgGCcucCUCGGCgcccugguuggucacCAGGCGGCg -3'
miRNA:   3'- -CAUGUaa-AgCGu--GAGCCG---------------GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 153013 0.69 0.880613
Target:  5'- -cGCGgaugUCGCGCUCcuggcccaGGCCgcccgagaccgacgAGGCGGCc -3'
miRNA:   3'- caUGUaa--AGCGUGAG--------CCGG--------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 153109 0.69 0.914244
Target:  5'- -cGCcgggCGCGCgcgaCGGCagCAGGCGGCu -3'
miRNA:   3'- caUGuaaaGCGUGa---GCCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 153438 0.74 0.671398
Target:  5'- -aGCAgccggUCGCGCUCguaGGCCA-GCGGCu -3'
miRNA:   3'- caUGUaa---AGCGUGAG---CCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 155936 0.71 0.837831
Target:  5'- -gACGgccuacUCGCGCcaccCGGaCCGGGCGGCc -3'
miRNA:   3'- caUGUaa----AGCGUGa---GCC-GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 156669 0.66 0.966903
Target:  5'- -aACGUcUCGCGCUUcGUCAGuCGGCu -3'
miRNA:   3'- caUGUAaAGCGUGAGcCGGUCcGCCG- -5'
14621 5' -54.9 NC_003521.1 + 156686 0.66 0.974498
Target:  5'- -gACAUcUUCGCGCUCggggaaaaggugcuGGCCGGGgaGGa -3'
miRNA:   3'- caUGUA-AAGCGUGAG--------------CCGGUCCg-CCg -5'
14621 5' -54.9 NC_003521.1 + 160769 0.67 0.963721
Target:  5'- ----cUUUCGCGCgugCcGCC-GGCGGCa -3'
miRNA:   3'- cauguAAAGCGUGa--GcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 163219 0.7 0.86634
Target:  5'- -cACGgg-CGCGCccggugacguggguUCGGCCAcGGCGGUc -3'
miRNA:   3'- caUGUaaaGCGUG--------------AGCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166657 0.68 0.940123
Target:  5'- -cGCGg--CGCAg-CGGCCA-GCGGCa -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166764 0.66 0.969882
Target:  5'- -gACAgcggCGCgugaGCUCGGgaCAGGCGGg -3'
miRNA:   3'- caUGUaaa-GCG----UGAGCCg-GUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 166986 0.7 0.868533
Target:  5'- -gACGUcgUUGCcCUCGGCCgucagcgcguccAGGCGGUu -3'
miRNA:   3'- caUGUAa-AGCGuGAGCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167263 0.72 0.77747
Target:  5'- -aGCGcc-CGCACcaCGGCCAGGUGGUu -3'
miRNA:   3'- caUGUaaaGCGUGa-GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167665 0.68 0.935407
Target:  5'- --cCAggUCGCA---GGCCgAGGCGGCg -3'
miRNA:   3'- cauGUaaAGCGUgagCCGG-UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 168530 0.67 0.963721
Target:  5'- -aGCAg---GCuggCGGCCAGcGCGGCg -3'
miRNA:   3'- caUGUaaagCGugaGCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 169317 0.67 0.948874
Target:  5'- -gGCGUcggUCGCAgCgucgCGGCCGGcGUGGUu -3'
miRNA:   3'- caUGUAa--AGCGU-Ga---GCCGGUC-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.