miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 180200 0.77 0.512793
Target:  5'- gGUACAgguacUCGCGCUCGGCguuGGUGGUg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAGCCGgu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 178822 0.67 0.960332
Target:  5'- gGUAUc--UCGUgaACUCGcUCAGGCGGCg -3'
miRNA:   3'- -CAUGuaaAGCG--UGAGCcGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 178241 0.67 0.956731
Target:  5'- -gGCuc-UCGCACU-GG-UAGGCGGCg -3'
miRNA:   3'- caUGuaaAGCGUGAgCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 177184 0.71 0.812036
Target:  5'- -cACGgggUUGCGCgugCGGuacuucuCCAGGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUGa--GCC-------GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 175790 0.72 0.77747
Target:  5'- -gGCAUaccccacaGC-CUCGGCCcuGGGCGGCa -3'
miRNA:   3'- caUGUAaag-----CGuGAGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 175429 0.66 0.977664
Target:  5'- -cGCGUcugaguggCGUGCUCGGCguacgaucGGCGGCg -3'
miRNA:   3'- caUGUAaa------GCGUGAGCCGgu------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 174257 0.69 0.90838
Target:  5'- -cGCAcgUUGCGCUggCGcGCCAGGuCGGUg -3'
miRNA:   3'- caUGUaaAGCGUGA--GC-CGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 174213 0.7 0.868533
Target:  5'- cGUugGggUCGCGCgggUCGGgCAGG-GGCg -3'
miRNA:   3'- -CAugUaaAGCGUG---AGCCgGUCCgCCG- -5'
14621 5' -54.9 NC_003521.1 + 169317 0.67 0.948874
Target:  5'- -gGCGUcggUCGCAgCgucgCGGCCGGcGUGGUu -3'
miRNA:   3'- caUGUAa--AGCGU-Ga---GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 168530 0.67 0.963721
Target:  5'- -aGCAg---GCuggCGGCCAGcGCGGCg -3'
miRNA:   3'- caUGUaaagCGugaGCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167665 0.68 0.935407
Target:  5'- --cCAggUCGCA---GGCCgAGGCGGCg -3'
miRNA:   3'- cauGUaaAGCGUgagCCGG-UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167263 0.72 0.77747
Target:  5'- -aGCGcc-CGCACcaCGGCCAGGUGGUu -3'
miRNA:   3'- caUGUaaaGCGUGa-GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166986 0.7 0.868533
Target:  5'- -gACGUcgUUGCcCUCGGCCgucagcgcguccAGGCGGUu -3'
miRNA:   3'- caUGUAa-AGCGuGAGCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166764 0.66 0.969882
Target:  5'- -gACAgcggCGCgugaGCUCGGgaCAGGCGGg -3'
miRNA:   3'- caUGUaaa-GCG----UGAGCCg-GUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 166657 0.68 0.940123
Target:  5'- -cGCGg--CGCAg-CGGCCA-GCGGCa -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 163219 0.7 0.86634
Target:  5'- -cACGgg-CGCGCccggugacguggguUCGGCCAcGGCGGUc -3'
miRNA:   3'- caUGUaaaGCGUG--------------AGCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 160769 0.67 0.963721
Target:  5'- ----cUUUCGCGCgugCcGCC-GGCGGCa -3'
miRNA:   3'- cauguAAAGCGUGa--GcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 156686 0.66 0.974498
Target:  5'- -gACAUcUUCGCGCUCggggaaaaggugcuGGCCGGGgaGGa -3'
miRNA:   3'- caUGUA-AAGCGUGAG--------------CCGGUCCg-CCg -5'
14621 5' -54.9 NC_003521.1 + 156669 0.66 0.966903
Target:  5'- -aACGUcUCGCGCUUcGUCAGuCGGCu -3'
miRNA:   3'- caUGUAaAGCGUGAGcCGGUCcGCCG- -5'
14621 5' -54.9 NC_003521.1 + 155936 0.71 0.837831
Target:  5'- -gACGgccuacUCGCGCcaccCGGaCCGGGCGGCc -3'
miRNA:   3'- caUGUaa----AGCGUGa---GCC-GGUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.