miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 134153 0.68 0.940123
Target:  5'- cGUGCAUcucgUCGCACa-GG-UAGGUGGCc -3'
miRNA:   3'- -CAUGUAa---AGCGUGagCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 131086 0.74 0.651381
Target:  5'- -cGCGgcUCGCGCgggcuccggaCGGCgGGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa---------GCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 128452 0.67 0.963721
Target:  5'- --------aGCGCUCGcCCAGGCGGa -3'
miRNA:   3'- cauguaaagCGUGAGCcGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 128139 0.69 0.882681
Target:  5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3'
miRNA:   3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 127652 0.69 0.882681
Target:  5'- -gGCAccUCGCGgcccauCUUGGCCgcgagcAGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGU------GAGCCGG------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 127541 0.71 0.821374
Target:  5'- uGUGCGgcggcaGCACgccgUCGGCCAGGUgcucGGCg -3'
miRNA:   3'- -CAUGUaaag--CGUG----AGCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 127129 0.66 0.972664
Target:  5'- -cGCGUcgUGCACcu--CCAGGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGagccGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126487 0.66 0.966903
Target:  5'- -cACGUcUUCGaCGaagaGcGCCAGGCGGCa -3'
miRNA:   3'- caUGUA-AAGC-GUgag-C-CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126407 0.73 0.710996
Target:  5'- -cACAggUCucggcccuGCGCgauggCGGCCAGGCGGUc -3'
miRNA:   3'- caUGUaaAG--------CGUGa----GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126128 0.71 0.828865
Target:  5'- cUGCAga-CGCGacccacgUagGGCCAGGCGGCg -3'
miRNA:   3'- cAUGUaaaGCGU-------GagCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124451 0.74 0.671398
Target:  5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3'
miRNA:   3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124033 0.66 0.972664
Target:  5'- -cGCGgc-CGUAgaCGGCCAgcgugccgcGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 123678 0.72 0.786535
Target:  5'- -aGCcgg-CGCGCUgCGGCguGGCGGUg -3'
miRNA:   3'- caUGuaaaGCGUGA-GCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 122623 0.67 0.956359
Target:  5'- -gGCGgccgCGCGCUCGGCgGccccgacuuugccGGCGGg -3'
miRNA:   3'- caUGUaaa-GCGUGAGCCGgU-------------CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 121801 0.74 0.641346
Target:  5'- gGUAC---UUGCGCUCGGCCGuGGUGGg -3'
miRNA:   3'- -CAUGuaaAGCGUGAGCCGGU-CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 120847 0.73 0.710996
Target:  5'- gGUGcCAUgcUGgACUCGGCCuugAGGCGGCc -3'
miRNA:   3'- -CAU-GUAaaGCgUGAGCCGG---UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117511 0.66 0.977664
Target:  5'- cGUACGgcgguaUGCACUCcgugGGCUAcgacgaccuGGCGGCa -3'
miRNA:   3'- -CAUGUaaa---GCGUGAG----CCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117390 0.68 0.930461
Target:  5'- gGUGCGgcaCGCGCUgugcUGGCaccggguggaGGGCGGCa -3'
miRNA:   3'- -CAUGUaaaGCGUGA----GCCGg---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117212 0.71 0.812893
Target:  5'- gGUGgAgaugUCGCACccgcugaCGGCCGcGGCGGCu -3'
miRNA:   3'- -CAUgUaa--AGCGUGa------GCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117027 0.66 0.977431
Target:  5'- -cGCGagUCGUACgucaaGGCCaguguuucgcccgAGGCGGCc -3'
miRNA:   3'- caUGUaaAGCGUGag---CCGG-------------UCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.