miRNA display CGI


Results 101 - 120 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 116604 0.66 0.969882
Target:  5'- cUGCAagUCGCug-CGGCCcgacaAGGUGGUg -3'
miRNA:   3'- cAUGUaaAGCGugaGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 115836 0.69 0.902289
Target:  5'- -aGCAgg-CGCugGCUCaGgCGGGCGGCg -3'
miRNA:   3'- caUGUaaaGCG--UGAGcCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 115806 0.68 0.919879
Target:  5'- -aGCAgucCGcCGCUCaGGCgCGGGUGGCu -3'
miRNA:   3'- caUGUaaaGC-GUGAG-CCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 115649 0.68 0.928933
Target:  5'- cGUGCGUgucggCGCcccagugGCgggugaagaaggCGGCCAGGCGGa -3'
miRNA:   3'- -CAUGUAaa---GCG-------UGa-----------GCCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 114419 0.69 0.902289
Target:  5'- ------aUCGCGCagGGCCGagaccuguGGCGGCa -3'
miRNA:   3'- cauguaaAGCGUGagCCGGU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 113104 0.68 0.930461
Target:  5'- gGUGCAgga-GCgGCUCucgGGCCAGGUGcGCg -3'
miRNA:   3'- -CAUGUaaagCG-UGAG---CCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 112732 0.67 0.959982
Target:  5'- cUGCuggagUCGCGCUuccagcgCGaGCCcauGGGCGGCa -3'
miRNA:   3'- cAUGuaa--AGCGUGA-------GC-CGG---UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 112420 0.66 0.96721
Target:  5'- -cGCcUUUCGgACcgacgcccgcucaggCGGcCCAGGCGGCc -3'
miRNA:   3'- caUGuAAAGCgUGa--------------GCC-GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 111589 0.66 0.966903
Target:  5'- gGUGC----CGCGCgUGGCCA-GCGGCg -3'
miRNA:   3'- -CAUGuaaaGCGUGaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 111194 0.71 0.837831
Target:  5'- -gACGUUgaGCAC-CcGCCGGGCGGCc -3'
miRNA:   3'- caUGUAAagCGUGaGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 111094 0.67 0.944611
Target:  5'- -cGCGga-CGCGCUCGGCgucgaCGGGCcGCg -3'
miRNA:   3'- caUGUaaaGCGUGAGCCG-----GUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 110884 0.69 0.889436
Target:  5'- -gGCAgaacugCGCcguCUCGGCCAGGUGuucGCg -3'
miRNA:   3'- caUGUaaa---GCGu--GAGCCGGUCCGC---CG- -5'
14621 5' -54.9 NC_003521.1 + 110744 0.68 0.925285
Target:  5'- -gGCAgUUC-CACUCGGCCAGcGagagcaGGCc -3'
miRNA:   3'- caUGUaAAGcGUGAGCCGGUC-Cg-----CCG- -5'
14621 5' -54.9 NC_003521.1 + 110676 0.71 0.821374
Target:  5'- -gGCGUa--GCGCUCGGU--GGCGGCa -3'
miRNA:   3'- caUGUAaagCGUGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 109584 0.68 0.935407
Target:  5'- -cGCGUgaagugCGCcaGCUCGGCCA-GCGaGCa -3'
miRNA:   3'- caUGUAaa----GCG--UGAGCCGGUcCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 108624 0.8 0.355908
Target:  5'- -gGCA---CGUugUUGGCCAGGCGGCu -3'
miRNA:   3'- caUGUaaaGCGugAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 108510 0.68 0.939662
Target:  5'- -cGCAgg-CGCACgcgggagauuuugUUGGCCuccacguGGCGGCa -3'
miRNA:   3'- caUGUaaaGCGUG-------------AGCCGGu------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 106601 0.73 0.740046
Target:  5'- -cGCGggcaGCuACUCGGCCAaGCGGCa -3'
miRNA:   3'- caUGUaaagCG-UGAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 106453 0.72 0.767355
Target:  5'- -cGCAguagCGCAuguugagcgacuuCUCGGCCAgcaucGGCGGCg -3'
miRNA:   3'- caUGUaaa-GCGU-------------GAGCCGGU-----CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 105644 0.67 0.948874
Target:  5'- uGUGCGUgaaGCccaGCUCGGgggUGGGCGGCa -3'
miRNA:   3'- -CAUGUAaagCG---UGAGCCg--GUCCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.