Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 131086 | 0.74 | 0.651381 |
Target: 5'- -cGCGgcUCGCGCgggcuccggaCGGCgGGGCGGCg -3' miRNA: 3'- caUGUaaAGCGUGa---------GCCGgUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 121801 | 0.74 | 0.641346 |
Target: 5'- gGUAC---UUGCGCUCGGCCGuGGUGGg -3' miRNA: 3'- -CAUGuaaAGCGUGAGCCGGU-CCGCCg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 145257 | 0.75 | 0.631304 |
Target: 5'- cUGCAgggCGCcucCUCGGCCucGGCGGCc -3' miRNA: 3'- cAUGUaaaGCGu--GAGCCGGu-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 150959 | 0.76 | 0.551583 |
Target: 5'- cGUGCAg-UCGCGCgacgCGGCgCuGGCGGCc -3' miRNA: 3'- -CAUGUaaAGCGUGa---GCCG-GuCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 148614 | 0.79 | 0.396042 |
Target: 5'- -cACAgcgcUCGuCGCgCGGCCGGGCGGCg -3' miRNA: 3'- caUGUaa--AGC-GUGaGCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 101903 | 0.72 | 0.786535 |
Target: 5'- uGUACAUguagggcaggCGCACcgagCGGCCGuGGUGGUa -3' miRNA: 3'- -CAUGUAaa--------GCGUGa---GCCGGU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 103836 | 0.71 | 0.795466 |
Target: 5'- uGUACAggggcCGCGuCUCGGCCucguccAGGCuGGCg -3' miRNA: 3'- -CAUGUaaa--GCGU-GAGCCGG------UCCG-CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 128139 | 0.69 | 0.882681 |
Target: 5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3' miRNA: 3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 226890 | 0.69 | 0.882681 |
Target: 5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3' miRNA: 3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 219443 | 0.69 | 0.882681 |
Target: 5'- -aGCGc-UCGCacaGCUCGGUCAGcuGCGGCa -3' miRNA: 3'- caUGUaaAGCG---UGAGCCGGUC--CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 153013 | 0.69 | 0.880613 |
Target: 5'- -cGCGgaugUCGCGCUCcuggcccaGGCCgcccgagaccgacgAGGCGGCc -3' miRNA: 3'- caUGUaa--AGCGUGAG--------CCGG--------------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 196423 | 0.7 | 0.868533 |
Target: 5'- -cACAgacagUCGCugUCGcCCGGGuCGGCc -3' miRNA: 3'- caUGUaa---AGCGugAGCcGGUCC-GCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 140856 | 0.7 | 0.86115 |
Target: 5'- -aGCGcUUCGCGguCUCGGCCgAGGCGccGCc -3' miRNA: 3'- caUGUaAAGCGU--GAGCCGG-UCCGC--CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 191003 | 0.7 | 0.86115 |
Target: 5'- cUGCAcggCGCACUgcaCGGCgcccagccauuCGGGCGGCa -3' miRNA: 3'- cAUGUaaaGCGUGA---GCCG-----------GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 31814 | 0.7 | 0.845793 |
Target: 5'- -gGCGUUugagCGCcguCUCGGCCcgggcgccgaAGGUGGCg -3' miRNA: 3'- caUGUAAa---GCGu--GAGCCGG----------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 46614 | 0.7 | 0.845793 |
Target: 5'- -aACAUgacgaCGUcCUCaGCCAGGCGGUa -3' miRNA: 3'- caUGUAaa---GCGuGAGcCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 27975 | 0.71 | 0.837831 |
Target: 5'- -gGCGg--CGCucaCGGCCAcGGCGGCa -3' miRNA: 3'- caUGUaaaGCGugaGCCGGU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 127541 | 0.71 | 0.821374 |
Target: 5'- uGUGCGgcggcaGCACgccgUCGGCCAGGUgcucGGCg -3' miRNA: 3'- -CAUGUaaag--CGUG----AGCCGGUCCG----CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 117212 | 0.71 | 0.812893 |
Target: 5'- gGUGgAgaugUCGCACccgcugaCGGCCGcGGCGGCu -3' miRNA: 3'- -CAUgUaa--AGCGUGa------GCCGGU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 76951 | 0.71 | 0.801633 |
Target: 5'- gGUGCGUUccaGCAUgucgCGGCCGaugcgcgugaugcuGGCGGCg -3' miRNA: 3'- -CAUGUAAag-CGUGa---GCCGGU--------------CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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