Results 61 - 80 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 27975 | 0.71 | 0.837831 |
Target: 5'- -gGCGg--CGCucaCGGCCAcGGCGGCa -3' miRNA: 3'- caUGUaaaGCGugaGCCGGU-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 46614 | 0.7 | 0.845793 |
Target: 5'- -aACAUgacgaCGUcCUCaGCCAGGCGGUa -3' miRNA: 3'- caUGUAaa---GCGuGAGcCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 143416 | 0.69 | 0.901667 |
Target: 5'- -aGC-UUUCGC-CUgGGCCAGGgcuccuuCGGCg -3' miRNA: 3'- caUGuAAAGCGuGAgCCGGUCC-------GCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 36181 | 0.69 | 0.902289 |
Target: 5'- -gGCGUgcccaCGCACcUGGCCGaGCGGCu -3' miRNA: 3'- caUGUAaa---GCGUGaGCCGGUcCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 115836 | 0.69 | 0.902289 |
Target: 5'- -aGCAgg-CGCugGCUCaGgCGGGCGGCg -3' miRNA: 3'- caUGUaaaGCG--UGAGcCgGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 76495 | 0.69 | 0.902289 |
Target: 5'- --cCGUgaCGUAgUCGGCCAGaGCGGg -3' miRNA: 3'- cauGUAaaGCGUgAGCCGGUC-CGCCg -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 114419 | 0.69 | 0.902289 |
Target: 5'- ------aUCGCGCagGGCCGagaccuguGGCGGCa -3' miRNA: 3'- cauguaaAGCGUGagCCGGU--------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 34389 | 0.69 | 0.90838 |
Target: 5'- -aGCAgguggUgGCGCUCgGGCCAGGUgaggaucagcugGGCg -3' miRNA: 3'- caUGUaa---AgCGUGAG-CCGGUCCG------------CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 98866 | 0.69 | 0.90838 |
Target: 5'- gGUACugcuacCGcCGCUCGuGCUAGGgGGCg -3' miRNA: 3'- -CAUGuaaa--GC-GUGAGC-CGGUCCgCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 225595 | 0.69 | 0.90838 |
Target: 5'- -gGCGgccUCGCGCUCGGCCGccuGCaGCc -3' miRNA: 3'- caUGUaa-AGCGUGAGCCGGUc--CGcCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 209541 | 0.69 | 0.895973 |
Target: 5'- -cGCGguuaUGCGCcCGGCgGGGUGGCg -3' miRNA: 3'- caUGUaaa-GCGUGaGCCGgUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 224411 | 0.69 | 0.889436 |
Target: 5'- gGUACAccUCGC---CGGCCAGGCGcuGCg -3' miRNA: 3'- -CAUGUaaAGCGugaGCCGGUCCGC--CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 31814 | 0.7 | 0.845793 |
Target: 5'- -gGCGUUugagCGCcguCUCGGCCcgggcgccgaAGGUGGCg -3' miRNA: 3'- caUGUAAa---GCGu--GAGCCGG----------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 191003 | 0.7 | 0.86115 |
Target: 5'- cUGCAcggCGCACUgcaCGGCgcccagccauuCGGGCGGCa -3' miRNA: 3'- cAUGUaaaGCGUGA---GCCG-----------GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 140856 | 0.7 | 0.86115 |
Target: 5'- -aGCGcUUCGCGguCUCGGCCgAGGCGccGCc -3' miRNA: 3'- caUGUaAAGCGU--GAGCCGG-UCCGC--CG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 196423 | 0.7 | 0.868533 |
Target: 5'- -cACAgacagUCGCugUCGcCCGGGuCGGCc -3' miRNA: 3'- caUGUaa---AGCGugAGCcGGUCC-GCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 153013 | 0.69 | 0.880613 |
Target: 5'- -cGCGgaugUCGCGCUCcuggcccaGGCCgcccgagaccgacgAGGCGGCc -3' miRNA: 3'- caUGUaa--AGCGUGAG--------CCGG--------------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 219443 | 0.69 | 0.882681 |
Target: 5'- -aGCGc-UCGCacaGCUCGGUCAGcuGCGGCa -3' miRNA: 3'- caUGUaaAGCG---UGAGCCGGUC--CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 226890 | 0.69 | 0.882681 |
Target: 5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3' miRNA: 3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 128139 | 0.69 | 0.882681 |
Target: 5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3' miRNA: 3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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