Results 101 - 120 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14621 | 5' | -54.9 | NC_003521.1 | + | 114419 | 0.69 | 0.902289 |
Target: 5'- ------aUCGCGCagGGCCGagaccuguGGCGGCa -3' miRNA: 3'- cauguaaAGCGUGagCCGGU--------CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 126407 | 0.73 | 0.710996 |
Target: 5'- -cACAggUCucggcccuGCGCgauggCGGCCAGGCGGUc -3' miRNA: 3'- caUGUaaAG--------CGUGa----GCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 74356 | 0.73 | 0.730441 |
Target: 5'- cUGCug--CGCgGCUaCGGCCAGuGCGGCg -3' miRNA: 3'- cAUGuaaaGCG-UGA-GCCGGUC-CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 106601 | 0.73 | 0.740046 |
Target: 5'- -cGCGggcaGCuACUCGGCCAaGCGGCa -3' miRNA: 3'- caUGUaaagCG-UGAGCCGGUcCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 167263 | 0.72 | 0.77747 |
Target: 5'- -aGCGcc-CGCACcaCGGCCAGGUGGUu -3' miRNA: 3'- caUGUaaaGCGUGa-GCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 201387 | 0.72 | 0.77747 |
Target: 5'- -gGCGc--CGgGCUCGGCCGGcaGCGGCa -3' miRNA: 3'- caUGUaaaGCgUGAGCCGGUC--CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 123678 | 0.72 | 0.786535 |
Target: 5'- -aGCcgg-CGCGCUgCGGCguGGCGGUg -3' miRNA: 3'- caUGuaaaGCGUGA-GCCGguCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 184020 | 0.71 | 0.804254 |
Target: 5'- -gACucgUUCGCGCgcgacgcCGGUUGGGCGGCc -3' miRNA: 3'- caUGua-AAGCGUGa------GCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 177184 | 0.71 | 0.812036 |
Target: 5'- -cACGgggUUGCGCgugCGGuacuucuCCAGGCGGCg -3' miRNA: 3'- caUGUaa-AGCGUGa--GCC-------GGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 91982 | 0.73 | 0.710996 |
Target: 5'- gGUGCAcggcaCGCAcCUCGGCCgaGGGCaGGCg -3' miRNA: 3'- -CAUGUaaa--GCGU-GAGCCGG--UCCG-CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 14435 | 0.73 | 0.691292 |
Target: 5'- -gACGUggUGCACaCGGCCcugcGGCGGCg -3' miRNA: 3'- caUGUAaaGCGUGaGCCGGu---CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 124451 | 0.74 | 0.671398 |
Target: 5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3' miRNA: 3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 39400 | 0.66 | 0.977664 |
Target: 5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3' miRNA: 3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 37709 | 0.78 | 0.447881 |
Target: 5'- -cGCAgagUGCcUUUGGCCAGGCGGCg -3' miRNA: 3'- caUGUaaaGCGuGAGCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 197866 | 0.78 | 0.447881 |
Target: 5'- -gGCGggUCGCGCUCgcugGGCugCAGGCGGCa -3' miRNA: 3'- caUGUaaAGCGUGAG----CCG--GUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 180200 | 0.77 | 0.512793 |
Target: 5'- gGUACAgguacUCGCGCUCGGCguuGGUGGUg -3' miRNA: 3'- -CAUGUaa---AGCGUGAGCCGgu-CCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 46398 | 0.75 | 0.601212 |
Target: 5'- gGUGCGUggggCGCGCg-GGCCAGgaaGCGGCg -3' miRNA: 3'- -CAUGUAaa--GCGUGagCCGGUC---CGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 98888 | 0.75 | 0.621263 |
Target: 5'- -gGCGcccaCGCGCUgcaCGGUCAGGCGGCu -3' miRNA: 3'- caUGUaaa-GCGUGA---GCCGGUCCGCCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 204630 | 0.75 | 0.621263 |
Target: 5'- -aGCGUUUgaGcCGCUCGGCCAGGUgcgugGGCa -3' miRNA: 3'- caUGUAAAg-C-GUGAGCCGGUCCG-----CCG- -5' |
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14621 | 5' | -54.9 | NC_003521.1 | + | 86162 | 0.74 | 0.661401 |
Target: 5'- -aGCGUcUCGCugccggcCUCGGCCA-GCGGCa -3' miRNA: 3'- caUGUAaAGCGu------GAGCCGGUcCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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