miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 74578 0.69 0.889436
Target:  5'- -aGCAcggCcCGCUC-GCCGGGCGGCa -3'
miRNA:   3'- caUGUaaaGcGUGAGcCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 152558 0.69 0.914244
Target:  5'- -gACAgccaGCACUCGGUCAaGCuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAGCCGGUcCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 98888 0.75 0.621263
Target:  5'- -gGCGcccaCGCGCUgcaCGGUCAGGCGGCu -3'
miRNA:   3'- caUGUaaa-GCGUGA---GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124451 0.74 0.671398
Target:  5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3'
miRNA:   3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 74356 0.73 0.730441
Target:  5'- cUGCug--CGCgGCUaCGGCCAGuGCGGCg -3'
miRNA:   3'- cAUGuaaaGCG-UGA-GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 201387 0.72 0.77747
Target:  5'- -gGCGc--CGgGCUCGGCCGGcaGCGGCa -3'
miRNA:   3'- caUGUaaaGCgUGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126128 0.71 0.828865
Target:  5'- cUGCAga-CGCGacccacgUagGGCCAGGCGGCg -3'
miRNA:   3'- cAUGUaaaGCGU-------GagCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 136622 0.7 0.845793
Target:  5'- cUGCAgca-GCACguaaUCGGCCacgggcgcgGGGCGGCg -3'
miRNA:   3'- cAUGUaaagCGUG----AGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 204881 0.7 0.86115
Target:  5'- -cGC-UUUCGCGaUUGGCCGcGCGGCg -3'
miRNA:   3'- caUGuAAAGCGUgAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166986 0.7 0.868533
Target:  5'- -gACGUcgUUGCcCUCGGCCgucagcgcguccAGGCGGUu -3'
miRNA:   3'- caUGUAa-AGCGuGAGCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 181727 0.66 0.975256
Target:  5'- -gACGcg-CGCACgcuGGCCAaGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGag-CCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124033 0.66 0.972664
Target:  5'- -cGCGgc-CGUAgaCGGCCAgcgugccgcGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 44060 0.68 0.925285
Target:  5'- -cGCgg-UCGCGC-CGGCCGgGGCaGCa -3'
miRNA:   3'- caUGuaaAGCGUGaGCCGGU-CCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 117390 0.68 0.930461
Target:  5'- gGUGCGgcaCGCGCUgugcUGGCaccggguggaGGGCGGCa -3'
miRNA:   3'- -CAUGUaaaGCGUGA----GCCGg---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87718 0.67 0.948874
Target:  5'- cUGCcg-UCGCGCgc-GCCcGGCGGCg -3'
miRNA:   3'- cAUGuaaAGCGUGagcCGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 207561 0.67 0.948874
Target:  5'- cUGCAcgaUCGCGC-CGGCCugcuGGCGuGUg -3'
miRNA:   3'- cAUGUaa-AGCGUGaGCCGGu---CCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 178241 0.67 0.956731
Target:  5'- -gGCuc-UCGCACU-GG-UAGGCGGCg -3'
miRNA:   3'- caUGuaaAGCGUGAgCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 112732 0.67 0.959982
Target:  5'- cUGCuggagUCGCGCUuccagcgCGaGCCcauGGGCGGCa -3'
miRNA:   3'- cAUGuaa--AGCGUGA-------GC-CGG---UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126487 0.66 0.966903
Target:  5'- -cACGUcUUCGaCGaagaGcGCCAGGCGGCa -3'
miRNA:   3'- caUGUA-AAGC-GUgag-C-CGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 102968 0.66 0.969882
Target:  5'- -gGCGUcg-GgGCUCuGGCgGGGCGGCc -3'
miRNA:   3'- caUGUAaagCgUGAG-CCGgUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.