miRNA display CGI


Results 81 - 100 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 201387 0.72 0.77747
Target:  5'- -gGCGc--CGgGCUCGGCCGGcaGCGGCa -3'
miRNA:   3'- caUGUaaaGCgUGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 186651 0.67 0.948874
Target:  5'- -gACG--UCGCGCggcggUGGCgGaGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa----GCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 166657 0.68 0.940123
Target:  5'- -cGCGg--CGCAg-CGGCCA-GCGGCa -3'
miRNA:   3'- caUGUaaaGCGUgaGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 97618 0.68 0.930461
Target:  5'- aGUGCAcgucgUCGUGCUCaGGCuCGacguucgcGGCGGCg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAG-CCG-GU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98888 0.75 0.621263
Target:  5'- -gGCGcccaCGCGCUgcaCGGUCAGGCGGCu -3'
miRNA:   3'- caUGUaaa-GCGUGA---GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124451 0.74 0.671398
Target:  5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3'
miRNA:   3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 74356 0.73 0.730441
Target:  5'- cUGCug--CGCgGCUaCGGCCAGuGCGGCg -3'
miRNA:   3'- cAUGuaaaGCG-UGA-GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 187870 0.67 0.948874
Target:  5'- uUGCAUggCGguCaccaccucgggCGGCaCGGGCGGCg -3'
miRNA:   3'- cAUGUAaaGCguGa----------GCCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 43483 0.67 0.952912
Target:  5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148424 0.67 0.952912
Target:  5'- gGUGCGggcggcCGCGCcggCGGCUccagGGGUGGCc -3'
miRNA:   3'- -CAUGUaaa---GCGUGa--GCCGG----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 226269 0.67 0.952912
Target:  5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3'
miRNA:   3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 226890 0.69 0.882681
Target:  5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3'
miRNA:   3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 224411 0.69 0.889436
Target:  5'- gGUACAccUCGC---CGGCCAGGCGcuGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGGUCCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 209541 0.69 0.895973
Target:  5'- -cGCGguuaUGCGCcCGGCgGGGUGGCg -3'
miRNA:   3'- caUGUaaa-GCGUGaGCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 72830 0.67 0.960332
Target:  5'- -aGCAggcucacCGCGa-CGGCCugGGGCGGCg -3'
miRNA:   3'- caUGUaaa----GCGUgaGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 178822 0.67 0.960332
Target:  5'- gGUAUc--UCGUgaACUCGcUCAGGCGGCg -3'
miRNA:   3'- -CAUGuaaAGCG--UGAGCcGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 213053 0.67 0.959982
Target:  5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3'
miRNA:   3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 101903 0.72 0.786535
Target:  5'- uGUACAUguagggcaggCGCACcgagCGGCCGuGGUGGUa -3'
miRNA:   3'- -CAUGUAaa--------GCGUGa---GCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 175790 0.72 0.77747
Target:  5'- -gGCAUaccccacaGC-CUCGGCCcuGGGCGGCa -3'
miRNA:   3'- caUGUAaag-----CGuGAGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 27268 0.67 0.956731
Target:  5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3'
miRNA:   3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.