miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 229375 0.66 0.977664
Target:  5'- uGUACAcgUCGUucgUGGCCcaaagacacGGGUGGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 43483 0.67 0.952912
Target:  5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 109584 0.68 0.935407
Target:  5'- -cGCGUgaagugCGCcaGCUCGGCCA-GCGaGCa -3'
miRNA:   3'- caUGUAaa----GCG--UGAGCCGGUcCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 30515 0.68 0.935407
Target:  5'- --cCAUgUCGCGCUUGGUgAGGaUGGUg -3'
miRNA:   3'- cauGUAaAGCGUGAGCCGgUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 209541 0.69 0.895973
Target:  5'- -cGCGguuaUGCGCcCGGCgGGGUGGCg -3'
miRNA:   3'- caUGUaaa-GCGUGaGCCGgUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 224411 0.69 0.889436
Target:  5'- gGUACAccUCGC---CGGCCAGGCGcuGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGGUCCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 226890 0.69 0.882681
Target:  5'- cUGCGggg-GCACcacggCGGCCAGcGCGGCc -3'
miRNA:   3'- cAUGUaaagCGUGa----GCCGGUC-CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 219443 0.69 0.882681
Target:  5'- -aGCGc-UCGCacaGCUCGGUCAGcuGCGGCa -3'
miRNA:   3'- caUGUaaAGCG---UGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 153013 0.69 0.880613
Target:  5'- -cGCGgaugUCGCGCUCcuggcccaGGCCgcccgagaccgacgAGGCGGCc -3'
miRNA:   3'- caUGUaa--AGCGUGAG--------CCGG--------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 196423 0.7 0.868533
Target:  5'- -cACAgacagUCGCugUCGcCCGGGuCGGCc -3'
miRNA:   3'- caUGUaa---AGCGugAGCcGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 140856 0.7 0.86115
Target:  5'- -aGCGcUUCGCGguCUCGGCCgAGGCGccGCc -3'
miRNA:   3'- caUGUaAAGCGU--GAGCCGG-UCCGC--CG- -5'
14621 5' -54.9 NC_003521.1 + 77713 0.67 0.944611
Target:  5'- -gGCGg--CGUugUUGGCgAcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGugAGCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 128139 0.69 0.882681
Target:  5'- -gGCGgccCGCGCUCGGCgaaggccugCAGGCagGGCg -3'
miRNA:   3'- caUGUaaaGCGUGAGCCG---------GUCCG--CCG- -5'
14621 5' -54.9 NC_003521.1 + 54526 0.66 0.977664
Target:  5'- cUGCAcggCGcCGCUgGgGCCcGGCGGCu -3'
miRNA:   3'- cAUGUaaaGC-GUGAgC-CGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 49257 0.66 0.977664
Target:  5'- -------cUGCGCUCGGCCucuAGGaUGGCc -3'
miRNA:   3'- cauguaaaGCGUGAGCCGG---UCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 117511 0.66 0.977664
Target:  5'- cGUACGgcgguaUGCACUCcgugGGCUAcgacgaccuGGCGGCa -3'
miRNA:   3'- -CAUGUaaa---GCGUGAG----CCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 145568 0.66 0.977664
Target:  5'- cGUGCAgaaCGUGCUgCGGCgGcacgacgcGGCGGCc -3'
miRNA:   3'- -CAUGUaaaGCGUGA-GCCGgU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 213053 0.67 0.959982
Target:  5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3'
miRNA:   3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 239627 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 137241 0.68 0.935407
Target:  5'- -------gCGCAC-CGGCCGgggccgacGGCGGCa -3'
miRNA:   3'- cauguaaaGCGUGaGCCGGU--------CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.