miRNA display CGI


Results 121 - 140 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 226269 0.67 0.952912
Target:  5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3'
miRNA:   3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 27268 0.67 0.956731
Target:  5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3'
miRNA:   3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 213053 0.67 0.959982
Target:  5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3'
miRNA:   3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 113104 0.68 0.930461
Target:  5'- gGUGCAgga-GCgGCUCucgGGCCAGGUGcGCg -3'
miRNA:   3'- -CAUGUaaagCG-UGAG---CCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 178822 0.67 0.960332
Target:  5'- gGUAUc--UCGUgaACUCGcUCAGGCGGCg -3'
miRNA:   3'- -CAUGuaaAGCG--UGAGCcGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 239627 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 229375 0.66 0.977664
Target:  5'- uGUACAcgUCGUucgUGGCCcaaagacacGGGUGGCg -3'
miRNA:   3'- -CAUGUaaAGCGugaGCCGG---------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 145568 0.66 0.977664
Target:  5'- cGUGCAgaaCGUGCUgCGGCgGcacgacgcGGCGGCc -3'
miRNA:   3'- -CAUGUaaaGCGUGA-GCCGgU--------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117511 0.66 0.977664
Target:  5'- cGUACGgcgguaUGCACUCcgugGGCUAcgacgaccuGGCGGCa -3'
miRNA:   3'- -CAUGUaaa---GCGUGAG----CCGGU---------CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 49257 0.66 0.977664
Target:  5'- -------cUGCGCUCGGCCucuAGGaUGGCc -3'
miRNA:   3'- cauguaaaGCGUGAGCCGG---UCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 54526 0.66 0.977664
Target:  5'- cUGCAcggCGcCGCUgGgGCCcGGCGGCu -3'
miRNA:   3'- cAUGUaaaGC-GUGAgC-CGGuCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 117027 0.66 0.977431
Target:  5'- -cGCGagUCGUACgucaaGGCCaguguuucgcccgAGGCGGCc -3'
miRNA:   3'- caUGUaaAGCGUGag---CCGG-------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 32103 0.66 0.975256
Target:  5'- aUGCGUUUgGCGgcgcggcugauCUCGGgCAGGUagcgGGCg -3'
miRNA:   3'- cAUGUAAAgCGU-----------GAGCCgGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 139793 0.66 0.975256
Target:  5'- -gGCG--UCGCcCUCGGC--GGUGGCg -3'
miRNA:   3'- caUGUaaAGCGuGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 72237 0.66 0.975256
Target:  5'- cGUGCA---CGUACUUGaGgaAGGCGGCg -3'
miRNA:   3'- -CAUGUaaaGCGUGAGC-CggUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 85738 0.66 0.975006
Target:  5'- cUGCAg--CGCcgcgaACUUGGCCaugagcgAGGUGGCc -3'
miRNA:   3'- cAUGUaaaGCG-----UGAGCCGG-------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 222687 0.66 0.972665
Target:  5'- -aGCGgcUCGaccuCggugCGGCCGGGCGuGCg -3'
miRNA:   3'- caUGUaaAGCgu--Ga---GCCGGUCCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 214198 0.66 0.971018
Target:  5'- -aACGUgcCGCACguccugaaagaggaCGGCCAGGauGCa -3'
miRNA:   3'- caUGUAaaGCGUGa-------------GCCGGUCCgcCG- -5'
14621 5' -54.9 NC_003521.1 + 57612 0.66 0.971018
Target:  5'- -aGCGUgccgUCGCGCUCcaggcacgucacgggGGCCgaaacgggacGGGaCGGCg -3'
miRNA:   3'- caUGUAa---AGCGUGAG---------------CCGG----------UCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 152594 0.66 0.971018
Target:  5'- aGUACAcgaUgGCcucCUCGGCgcccugguuggucacCAGGCGGCg -3'
miRNA:   3'- -CAUGUaa-AgCGu--GAGCCG---------------GUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.