miRNA display CGI


Results 141 - 160 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 72237 0.66 0.975256
Target:  5'- cGUGCA---CGUACUUGaGgaAGGCGGCg -3'
miRNA:   3'- -CAUGUaaaGCGUGAGC-CggUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 85900 0.66 0.975256
Target:  5'- -gACAUgaccCGacuCUUGGUCAGGuCGGCg -3'
miRNA:   3'- caUGUAaa--GCgu-GAGCCGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 139793 0.66 0.975256
Target:  5'- -gGCG--UCGCcCUCGGC--GGUGGCg -3'
miRNA:   3'- caUGUaaAGCGuGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 112420 0.66 0.96721
Target:  5'- -cGCcUUUCGgACcgacgcccgcucaggCGGcCCAGGCGGCc -3'
miRNA:   3'- caUGuAAAGCgUGa--------------GCC-GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 87870 0.66 0.966903
Target:  5'- -cGCAg---GCGCU-GGCCAGGCcguuGGCg -3'
miRNA:   3'- caUGUaaagCGUGAgCCGGUCCG----CCG- -5'
14621 5' -54.9 NC_003521.1 + 50305 0.66 0.966903
Target:  5'- -cGCAccUCGCucCUCaGCCAGGgaGGCa -3'
miRNA:   3'- caUGUaaAGCGu-GAGcCGGUCCg-CCG- -5'
14621 5' -54.9 NC_003521.1 + 194140 0.68 0.939662
Target:  5'- -aGCG-UUCGCAucuccacCUCGG-CGGGCGGUu -3'
miRNA:   3'- caUGUaAAGCGU-------GAGCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 134153 0.68 0.940123
Target:  5'- cGUGCAUcucgUCGCACa-GG-UAGGUGGCc -3'
miRNA:   3'- -CAUGUAa---AGCGUGagCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 77713 0.67 0.944611
Target:  5'- -gGCGg--CGUugUUGGCgAcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGugAGCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 236026 0.67 0.944611
Target:  5'- -aACAUgaUGCACUucgUGGUCAGGCaGCu -3'
miRNA:   3'- caUGUAaaGCGUGA---GCCGGUCCGcCG- -5'
14621 5' -54.9 NC_003521.1 + 105644 0.67 0.948874
Target:  5'- uGUGCGUgaaGCccaGCUCGGgggUGGGCGGCa -3'
miRNA:   3'- -CAUGUAaagCG---UGAGCCg--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 187870 0.67 0.948874
Target:  5'- uUGCAUggCGguCaccaccucgggCGGCaCGGGCGGCg -3'
miRNA:   3'- cAUGUAaaGCguGa----------GCCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 43483 0.67 0.952912
Target:  5'- -gGCGgc-CGUGCU-GGCCGcGGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGAgCCGGU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 148424 0.67 0.952912
Target:  5'- gGUGCGggcggcCGCGCcggCGGCUccagGGGUGGCc -3'
miRNA:   3'- -CAUGUaaa---GCGUGa--GCCGG----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 226269 0.67 0.952912
Target:  5'- -cGCAgUUCaggauGCGCUCGGCCGuGGCGu- -3'
miRNA:   3'- caUGUaAAG-----CGUGAGCCGGU-CCGCcg -5'
14621 5' -54.9 NC_003521.1 + 27268 0.67 0.956731
Target:  5'- aUGCGg--CcCACgaaGGCCAGGCGGg -3'
miRNA:   3'- cAUGUaaaGcGUGag-CCGGUCCGCCg -5'
14621 5' -54.9 NC_003521.1 + 213053 0.67 0.959982
Target:  5'- aGUAgGUUUcuuccucCGCGCUCGGC--GGaCGGCa -3'
miRNA:   3'- -CAUgUAAA-------GCGUGAGCCGguCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 178822 0.67 0.960332
Target:  5'- gGUAUc--UCGUgaACUCGcUCAGGCGGCg -3'
miRNA:   3'- -CAUGuaaAGCG--UGAGCcGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 72830 0.67 0.960332
Target:  5'- -aGCAggcucacCGCGa-CGGCCugGGGCGGCg -3'
miRNA:   3'- caUGUaaa----GCGUgaGCCGG--UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 156669 0.66 0.966903
Target:  5'- -aACGUcUCGCGCUUcGUCAGuCGGCu -3'
miRNA:   3'- caUGUAaAGCGUGAGcCGGUCcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.