miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 3' -57.7 NC_003521.1 + 6682 0.66 0.889033
Target:  5'- uCGUGCUGCagggccugCGCCC--GC-GAGCGCUg -3'
miRNA:   3'- -GCACGACG--------GCGGGuaUGuCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 196294 0.66 0.889033
Target:  5'- gCGUGCcggGCCGCuugaugcuggCCAUGCAGcGCAUgGg -3'
miRNA:   3'- -GCACGa--CGGCG----------GGUAUGUCuCGUGgU- -5'
14623 3' -57.7 NC_003521.1 + 40402 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 21752 0.66 0.889033
Target:  5'- gGU-CUcGCUGCUCAUGCAccuGGGCGCCGu -3'
miRNA:   3'- gCAcGA-CGGCGGGUAUGU---CUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 88206 0.66 0.889033
Target:  5'- -cUGC-GCCGCCUGgugaccaacCAGGGCGCCGa -3'
miRNA:   3'- gcACGaCGGCGGGUau-------GUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 80 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 102000 0.66 0.889033
Target:  5'- cCGUaGCcGCCGCCau--CAGGcGCGCCAu -3'
miRNA:   3'- -GCA-CGaCGGCGGguauGUCU-CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 240629 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 40920 0.66 0.889033
Target:  5'- --gGCggggGCgGCCCGgg-GGAGCGCCAu -3'
miRNA:   3'- gcaCGa---CGgCGGGUaugUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 1580 0.66 0.888374
Target:  5'- cCGUcGCUGCUGacggCCGUGCAGcgccacauccaccAGCGCCu -3'
miRNA:   3'- -GCA-CGACGGCg---GGUAUGUC-------------UCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 201807 0.66 0.888374
Target:  5'- cCGUcGCUGCUGacggCCGUGCAGcgccacauccaccAGCGCCu -3'
miRNA:   3'- -GCA-CGACGGCg---GGUAUGUC-------------UCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 180815 0.67 0.882348
Target:  5'- gGUGCUGUCGCgCugcUGCAG-GCuGCCGg -3'
miRNA:   3'- gCACGACGGCGgGu--AUGUCuCG-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 222950 0.67 0.882348
Target:  5'- gGUGCcgUGCUuaCCCAUcaucagcacGCAGGGCACCu -3'
miRNA:   3'- gCACG--ACGGc-GGGUA---------UGUCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 52957 0.67 0.882348
Target:  5'- --cGCUGCCcucGUguuUCAUGCAGAGgCGCCAc -3'
miRNA:   3'- gcaCGACGG---CG---GGUAUGUCUC-GUGGU- -5'
14623 3' -57.7 NC_003521.1 + 35487 0.67 0.882348
Target:  5'- --aGCUGCCGCCgCcgAgGaGGCGCCGu -3'
miRNA:   3'- gcaCGACGGCGG-GuaUgUcUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 26265 0.67 0.882348
Target:  5'- --cGCUGCUGCaCCAc-CAG-GCACCGg -3'
miRNA:   3'- gcaCGACGGCG-GGUauGUCuCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 114519 0.67 0.882348
Target:  5'- cCGUGCccaccGCCGCC---ACGG-GCACCAu -3'
miRNA:   3'- -GCACGa----CGGCGGguaUGUCuCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 43956 0.67 0.875453
Target:  5'- cCGgcgGCUGCUGCUCGacaugcugacGCAGAGCugCu -3'
miRNA:   3'- -GCa--CGACGGCGGGUa---------UGUCUCGugGu -5'
14623 3' -57.7 NC_003521.1 + 171525 0.67 0.875453
Target:  5'- aCG-GC-GCCGCCCuGUGuCGGGGCugCGc -3'
miRNA:   3'- -GCaCGaCGGCGGG-UAU-GUCUCGugGU- -5'
14623 3' -57.7 NC_003521.1 + 206881 0.67 0.875453
Target:  5'- -cUGCUcGCCGCgcacgCCGcACAGcAGCACCAu -3'
miRNA:   3'- gcACGA-CGGCG-----GGUaUGUC-UCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.