Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14625 | 3' | -60.2 | NC_003521.1 | + | 225501 | 1.09 | 0.002057 |
Target: 5'- aCCAGCGCGCUGAUCACCCGCUCGGCGc -3' miRNA: 3'- -GGUCGCGCGACUAGUGGGCGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 124999 | 0.81 | 0.155132 |
Target: 5'- gCCAGCGCcuGCUGAgcCACCCGCgccugagCGGCGg -3' miRNA: 3'- -GGUCGCG--CGACUa-GUGGGCGa------GCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 55075 | 0.8 | 0.187517 |
Target: 5'- cCUAG-GCGCUccgGcgCACCCGCUCGGCGa -3' miRNA: 3'- -GGUCgCGCGA---CuaGUGGGCGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 16083 | 0.78 | 0.236237 |
Target: 5'- cCCGaCGCGCUGGcCGCCUGCgUCGGCGa -3' miRNA: 3'- -GGUcGCGCGACUaGUGGGCG-AGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 179530 | 0.78 | 0.252796 |
Target: 5'- aCgGGCGCGCaaaGUCGuCCCGCUCGGCu -3' miRNA: 3'- -GgUCGCGCGac-UAGU-GGGCGAGCCGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 19484 | 0.78 | 0.264358 |
Target: 5'- gCCAG-GUGCaGGUgGCCCGCUCGGUGu -3' miRNA: 3'- -GGUCgCGCGaCUAgUGGGCGAGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 99600 | 0.77 | 0.288763 |
Target: 5'- gCGGCGCGUUGGUgACCUGCagcgccCGGCGg -3' miRNA: 3'- gGUCGCGCGACUAgUGGGCGa-----GCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 198755 | 0.75 | 0.36485 |
Target: 5'- gCCGuGCuCGCUGGUCGCgCCGCUCgugGGCGa -3' miRNA: 3'- -GGU-CGcGCGACUAGUG-GGCGAG---CCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 85248 | 0.74 | 0.394961 |
Target: 5'- gCCGGCGCGCaaauaacUGGcUACCCGCUCcGCGc -3' miRNA: 3'- -GGUCGCGCG-------ACUaGUGGGCGAGcCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 141944 | 0.74 | 0.436675 |
Target: 5'- gCAGCGCGUgGGcgccCACCUGCUgGGCGa -3' miRNA: 3'- gGUCGCGCGaCUa---GUGGGCGAgCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 205679 | 0.74 | 0.436675 |
Target: 5'- cCgGGCGCGUgGcgCACCCGCgcucagucgCGGCGa -3' miRNA: 3'- -GgUCGCGCGaCuaGUGGGCGa--------GCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 18704 | 0.73 | 0.445148 |
Target: 5'- gCCGGCGCgauccgGCUGuggCugCCGCUggCGGCGg -3' miRNA: 3'- -GGUCGCG------CGACua-GugGGCGA--GCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 16744 | 0.73 | 0.462366 |
Target: 5'- gCCGGCGCGCg---CGCCCGC-CGGa- -3' miRNA: 3'- -GGUCGCGCGacuaGUGGGCGaGCCgc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 136729 | 0.73 | 0.477272 |
Target: 5'- gCAGCGCGCcgccuuccgcguccUGccgCGCCCGCUCGaGCu -3' miRNA: 3'- gGUCGCGCG--------------ACua-GUGGGCGAGC-CGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 225884 | 0.72 | 0.497807 |
Target: 5'- uCCAuGCGCGuCUGGcgCugCCGCUCGcGCu -3' miRNA: 3'- -GGU-CGCGC-GACUa-GugGGCGAGC-CGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 139309 | 0.72 | 0.506859 |
Target: 5'- gCAGCGCcuGCUGGUCGgCCGCgucUGGCc -3' miRNA: 3'- gGUCGCG--CGACUAGUgGGCGa--GCCGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 27770 | 0.72 | 0.506859 |
Target: 5'- gCCgAGCGCGgaGGaagaaaccuacUCcgGCCCGCUCGGCc -3' miRNA: 3'- -GG-UCGCGCgaCU-----------AG--UGGGCGAGCCGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 137613 | 0.72 | 0.525167 |
Target: 5'- aCC-GCGCGCUGGaCGCcuaCCGCUCGcGCa -3' miRNA: 3'- -GGuCGCGCGACUaGUG---GGCGAGC-CGc -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 132404 | 0.72 | 0.525167 |
Target: 5'- uCCGGCaGaCGCUGuuUCGCCUGUgCGGCGa -3' miRNA: 3'- -GGUCG-C-GCGACu-AGUGGGCGaGCCGC- -5' |
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14625 | 3' | -60.2 | NC_003521.1 | + | 21587 | 0.72 | 0.528859 |
Target: 5'- cCCGGCGCuGCUGAccuggguccugcaacUCugCUGCcUGGCGa -3' miRNA: 3'- -GGUCGCG-CGACU---------------AGugGGCGaGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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