miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 3' -60.2 NC_003521.1 + 4602 0.67 0.811926
Target:  5'- aCgGGcCGCGCggggGAacaugaccUCACCCGCuccgUCGGCu -3'
miRNA:   3'- -GgUC-GCGCGa---CU--------AGUGGGCG----AGCCGc -5'
14625 3' -60.2 NC_003521.1 + 5547 0.66 0.835825
Target:  5'- gCGGCGCGUcGuUCcuCCCgguugcggGCUCGGCGg -3'
miRNA:   3'- gGUCGCGCGaCuAGu-GGG--------CGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 12748 0.66 0.835825
Target:  5'- uCCGGCGCcucggacgugaGCUGGg-ACCCGCgCGuGCGc -3'
miRNA:   3'- -GGUCGCG-----------CGACUagUGGGCGaGC-CGC- -5'
14625 3' -60.2 NC_003521.1 + 13854 0.68 0.733272
Target:  5'- cUCGGCGCGggGGUC-UCUGCgggCGGCGc -3'
miRNA:   3'- -GGUCGCGCgaCUAGuGGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 15334 0.69 0.667502
Target:  5'- aUCAGCGCGCUGGUgcagCAgUCGCgacUGGUGa -3'
miRNA:   3'- -GGUCGCGCGACUA----GUgGGCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 16083 0.78 0.236237
Target:  5'- cCCGaCGCGCUGGcCGCCUGCgUCGGCGa -3'
miRNA:   3'- -GGUcGCGCGACUaGUGGGCG-AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 16262 0.67 0.820045
Target:  5'- gCGGCuGCGCUGccgCugguuCCUGCUgGGCGc -3'
miRNA:   3'- gGUCG-CGCGACua-Gu----GGGCGAgCCGC- -5'
14625 3' -60.2 NC_003521.1 + 16744 0.73 0.462366
Target:  5'- gCCGGCGCGCg---CGCCCGC-CGGa- -3'
miRNA:   3'- -GGUCGCGCGacuaGUGGGCGaGCCgc -5'
14625 3' -60.2 NC_003521.1 + 16987 0.66 0.835825
Target:  5'- gCAGC-CGCaGGgacagcaggCGCCCGCgguggCGGCGg -3'
miRNA:   3'- gGUCGcGCGaCUa--------GUGGGCGa----GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 17057 0.68 0.74242
Target:  5'- aCCAGCaGCGCcGA-CGauaCCGCUggCGGCGa -3'
miRNA:   3'- -GGUCG-CGCGaCUaGUg--GGCGA--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 17142 0.7 0.629203
Target:  5'- gCCGGCGCGCU--UCGCCCGaccCUCccuGGCc -3'
miRNA:   3'- -GGUCGCGCGAcuAGUGGGC---GAG---CCGc -5'
14625 3' -60.2 NC_003521.1 + 17797 0.66 0.865391
Target:  5'- gUCGGCGUGCUG---GCCgUGCgacCGGCGg -3'
miRNA:   3'- -GGUCGCGCGACuagUGG-GCGa--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 18172 0.72 0.534415
Target:  5'- gCAGCguggagGCGCUGcgCGCCUGC-CGGCc -3'
miRNA:   3'- gGUCG------CGCGACuaGUGGGCGaGCCGc -5'
14625 3' -60.2 NC_003521.1 + 18704 0.73 0.445148
Target:  5'- gCCGGCGCgauccgGCUGuggCugCCGCUggCGGCGg -3'
miRNA:   3'- -GGUCGCG------CGACua-GugGGCGA--GCCGC- -5'
14625 3' -60.2 NC_003521.1 + 19484 0.78 0.264358
Target:  5'- gCCAG-GUGCaGGUgGCCCGCUCGGUGu -3'
miRNA:   3'- -GGUCgCGCGaCUAgUGGGCGAGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 19866 0.72 0.54372
Target:  5'- gCAGCGCucccuGCUGA-CGgCCGCgUCGGCGc -3'
miRNA:   3'- gGUCGCG-----CGACUaGUgGGCG-AGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 21351 0.68 0.74242
Target:  5'- cUCAGCGCGCUGcuaugGUCGCUCGUgccgCaGCu -3'
miRNA:   3'- -GGUCGCGCGAC-----UAGUGGGCGa---GcCGc -5'
14625 3' -60.2 NC_003521.1 + 21587 0.72 0.528859
Target:  5'- cCCGGCGCuGCUGAccuggguccugcaacUCugCUGCcUGGCGa -3'
miRNA:   3'- -GGUCGCG-CGACU---------------AGugGGCGaGCCGC- -5'
14625 3' -60.2 NC_003521.1 + 24479 0.69 0.695986
Target:  5'- gCCAGCGCGUgcugGAUCuACUggCGCUaCGaGCGg -3'
miRNA:   3'- -GGUCGCGCGa---CUAG-UGG--GCGA-GC-CGC- -5'
14625 3' -60.2 NC_003521.1 + 26438 0.67 0.803665
Target:  5'- aCCuGgGCGCUGuucGUgGCCUGCaaCGGCGu -3'
miRNA:   3'- -GGuCgCGCGAC---UAgUGGGCGa-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.