miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 122242 0.69 0.895716
Target:  5'- -gCGACuGAGCGCcgccaCGUCGCUGGGCGu -3'
miRNA:   3'- caGCUG-CUUGCGca---GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 216622 0.7 0.829751
Target:  5'- aGUCGACGGuaggcggGCGCGcCGaCGCCGGGa- -3'
miRNA:   3'- -CAGCUGCU-------UGCGCaGCaGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 77247 0.7 0.830559
Target:  5'- cGUCGGCGGgguccACGgGguacUCGcCGCCGGGCAc -3'
miRNA:   3'- -CAGCUGCU-----UGCgC----AGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 17546 0.7 0.854008
Target:  5'- aGUUGcGCGAACGCaUCGUCACCGaucuGCAg -3'
miRNA:   3'- -CAGC-UGCUUGCGcAGCAGUGGUc---CGU- -5'
14625 5' -55.8 NC_003521.1 + 224084 0.7 0.854008
Target:  5'- -cCGGCGGGCGCG-CG-CGCC-GGCGg -3'
miRNA:   3'- caGCUGCUUGCGCaGCaGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 168978 0.69 0.868714
Target:  5'- uGUCGcCGAcGCGCGUCGgUCGCgggAGGCGg -3'
miRNA:   3'- -CAGCuGCU-UGCGCAGC-AGUGg--UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 54312 0.69 0.881952
Target:  5'- --aGAgcAGCGCGUCGugcuccgUCACCAGGCGc -3'
miRNA:   3'- cagCUgcUUGCGCAGC-------AGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 134144 0.69 0.889278
Target:  5'- --aGugGAugGCGugcaucUCGUCGCaCAGGUAg -3'
miRNA:   3'- cagCugCUugCGC------AGCAGUG-GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 232279 0.69 0.889278
Target:  5'- -gUGACGGugGaUGUCGUCGcgcccacgguCCGGGCAc -3'
miRNA:   3'- caGCUGCUugC-GCAGCAGU----------GGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 210889 0.7 0.822398
Target:  5'- cGUCGccuCGGugGC--CGUCGCCAGGCc -3'
miRNA:   3'- -CAGCu--GCUugCGcaGCAGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 138015 0.71 0.814076
Target:  5'- cGUCGAgGuGCGCGUgCGUCgcuGCCGGcGCAc -3'
miRNA:   3'- -CAGCUgCuUGCGCA-GCAG---UGGUC-CGU- -5'
14625 5' -55.8 NC_003521.1 + 142475 0.71 0.814076
Target:  5'- gGUCGAaac-CGCGUCGUCucuGCCAGcGCAa -3'
miRNA:   3'- -CAGCUgcuuGCGCAGCAG---UGGUC-CGU- -5'
14625 5' -55.8 NC_003521.1 + 90910 0.77 0.47261
Target:  5'- cGUCGGCGucgGUGUUGUUGCCGGGCAa -3'
miRNA:   3'- -CAGCUGCuugCGCAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 130752 0.75 0.606171
Target:  5'- uGUCGGCGGGCGCGagCGccgCGCCGGGgGa -3'
miRNA:   3'- -CAGCUGCUUGCGCa-GCa--GUGGUCCgU- -5'
14625 5' -55.8 NC_003521.1 + 105569 0.73 0.675206
Target:  5'- cGUCGGCGuccgccgcCGUGUCGUCGCCGccgccGGCGc -3'
miRNA:   3'- -CAGCUGCuu------GCGCAGCAGUGGU-----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 145277 0.72 0.72272
Target:  5'- cUCGGCGGccagcucGCGCGccggCGUCucGCCGGGCAu -3'
miRNA:   3'- cAGCUGCU-------UGCGCa---GCAG--UGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 43125 0.72 0.733181
Target:  5'- -gCGGCGAGCGC-UCGgCGCUGGGCGu -3'
miRNA:   3'- caGCUGCUUGCGcAGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 220649 0.72 0.751012
Target:  5'- cGUCGcgacGCGGAC-CGUCGUCGCCGucgucucGGCAc -3'
miRNA:   3'- -CAGC----UGCUUGcGCAGCAGUGGU-------CCGU- -5'
14625 5' -55.8 NC_003521.1 + 138637 0.71 0.788216
Target:  5'- --aGACGAagccaaACGCGUCGUCAUCaagggagacgGGGCGg -3'
miRNA:   3'- cagCUGCU------UGCGCAGCAGUGG----------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 149179 0.71 0.8056
Target:  5'- cUCGGC--GCGCGUCGcCACC-GGCGg -3'
miRNA:   3'- cAGCUGcuUGCGCAGCaGUGGuCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.