miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 225719 1.12 0.013141
Target:  5'- uGCGGAUCGAAGCGCUCCGUUAAACAGa -3'
miRNA:   3'- -CGCCUAGCUUCGCGAGGCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 36275 0.77 0.832989
Target:  5'- cGUGGAUCGAGGCGCUgCGcaccuCGGa -3'
miRNA:   3'- -CGCCUAGCUUCGCGAgGCaauuuGUC- -5'
14626 3' -49.6 NC_003521.1 + 178723 0.75 0.918379
Target:  5'- cGCGGGcgcCGAAGCGUUCCcgGUUGGACuGg -3'
miRNA:   3'- -CGCCUa--GCUUCGCGAGG--CAAUUUGuC- -5'
14626 3' -49.6 NC_003521.1 + 186523 0.74 0.923993
Target:  5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3'
miRNA:   3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 135795 0.74 0.939378
Target:  5'- gGCGGGccguccUCGAAGCGCUcCCGUUcccgcuccuGCAGc -3'
miRNA:   3'- -CGCCU------AGCUUCGCGA-GGCAAuu-------UGUC- -5'
14626 3' -49.6 NC_003521.1 + 140746 0.72 0.966993
Target:  5'- gGCGG-UCGAGGCGCccgccUCCGUgccGGGCGa -3'
miRNA:   3'- -CGCCuAGCUUCGCG-----AGGCAa--UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 167120 0.72 0.966993
Target:  5'- cCGGGUCGcuGCGCUCCacgaagcucUUGAGCAGc -3'
miRNA:   3'- cGCCUAGCuuCGCGAGGc--------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 166220 0.71 0.980247
Target:  5'- cGCGGcggCGAGGCGCgCCGgcc-GCGGg -3'
miRNA:   3'- -CGCCua-GCUUCGCGaGGCaauuUGUC- -5'
14626 3' -49.6 NC_003521.1 + 130756 0.7 0.987603
Target:  5'- gGCGGG-CGcGAGCGCcgcgCCGgggGAGCAGa -3'
miRNA:   3'- -CGCCUaGC-UUCGCGa---GGCaa-UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 52174 0.7 0.987603
Target:  5'- cGCGGGUCcgcccGCGaUUCCGUUGAcGCAGg -3'
miRNA:   3'- -CGCCUAGcuu--CGC-GAGGCAAUU-UGUC- -5'
14626 3' -49.6 NC_003521.1 + 122668 0.7 0.987603
Target:  5'- aGCGcGAUCGAGGCGC-CCagcaccGACAGc -3'
miRNA:   3'- -CGC-CUAGCUUCGCGaGGcaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 202737 0.7 0.987603
Target:  5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3'
miRNA:   3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 197500 0.7 0.988919
Target:  5'- aCGGcgCGGAGCaguguucGUUCCGggGAACGGu -3'
miRNA:   3'- cGCCuaGCUUCG-------CGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 50397 0.7 0.990377
Target:  5'- uGCGGcuacuacucgccGUCGAcGCGCUCCGcgGAcucGCGGu -3'
miRNA:   3'- -CGCC------------UAGCUuCGCGAGGCaaUU---UGUC- -5'
14626 3' -49.6 NC_003521.1 + 104175 0.7 0.992638
Target:  5'- cGCGGGUCGcacGGCGUUgCGguagUAGACGu -3'
miRNA:   3'- -CGCCUAGCu--UCGCGAgGCa---AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 216068 0.69 0.993953
Target:  5'- uGCGGGUCGAuugaugucgcguuacGGgGUgugCCGUUAAAUAc -3'
miRNA:   3'- -CGCCUAGCU---------------UCgCGa--GGCAAUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 86599 0.69 0.994455
Target:  5'- gGCGG--CGAAGCGCUCgCGcgAGAgGGa -3'
miRNA:   3'- -CGCCuaGCUUCGCGAG-GCaaUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 153844 0.69 0.994455
Target:  5'- aCGGAUgGAcGCGCUCCagaccAGCAGg -3'
miRNA:   3'- cGCCUAgCUuCGCGAGGcaau-UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 5669 0.69 0.994455
Target:  5'- gGgGGGUCGAgacacgGGCGC-CCGUccgcgggGAACGGg -3'
miRNA:   3'- -CgCCUAGCU------UCGCGaGGCAa------UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 237034 0.69 0.994455
Target:  5'- uGCuGGAUCGcGGUGCUCUGUgccGCGa -3'
miRNA:   3'- -CG-CCUAGCuUCGCGAGGCAauuUGUc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.