Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14626 | 3' | -49.6 | NC_003521.1 | + | 225719 | 1.12 | 0.013141 |
Target: 5'- uGCGGAUCGAAGCGCUCCGUUAAACAGa -3' miRNA: 3'- -CGCCUAGCUUCGCGAGGCAAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 36275 | 0.77 | 0.832989 |
Target: 5'- cGUGGAUCGAGGCGCUgCGcaccuCGGa -3' miRNA: 3'- -CGCCUAGCUUCGCGAgGCaauuuGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 178723 | 0.75 | 0.918379 |
Target: 5'- cGCGGGcgcCGAAGCGUUCCcgGUUGGACuGg -3' miRNA: 3'- -CGCCUa--GCUUCGCGAGG--CAAUUUGuC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 186523 | 0.74 | 0.923993 |
Target: 5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3' miRNA: 3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 135795 | 0.74 | 0.939378 |
Target: 5'- gGCGGGccguccUCGAAGCGCUcCCGUUcccgcuccuGCAGc -3' miRNA: 3'- -CGCCU------AGCUUCGCGA-GGCAAuu-------UGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 140746 | 0.72 | 0.966993 |
Target: 5'- gGCGG-UCGAGGCGCccgccUCCGUgccGGGCGa -3' miRNA: 3'- -CGCCuAGCUUCGCG-----AGGCAa--UUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 167120 | 0.72 | 0.966993 |
Target: 5'- cCGGGUCGcuGCGCUCCacgaagcucUUGAGCAGc -3' miRNA: 3'- cGCCUAGCuuCGCGAGGc--------AAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 166220 | 0.71 | 0.980247 |
Target: 5'- cGCGGcggCGAGGCGCgCCGgcc-GCGGg -3' miRNA: 3'- -CGCCua-GCUUCGCGaGGCaauuUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 130756 | 0.7 | 0.987603 |
Target: 5'- gGCGGG-CGcGAGCGCcgcgCCGgggGAGCAGa -3' miRNA: 3'- -CGCCUaGC-UUCGCGa---GGCaa-UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 52174 | 0.7 | 0.987603 |
Target: 5'- cGCGGGUCcgcccGCGaUUCCGUUGAcGCAGg -3' miRNA: 3'- -CGCCUAGcuu--CGC-GAGGCAAUU-UGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 122668 | 0.7 | 0.987603 |
Target: 5'- aGCGcGAUCGAGGCGC-CCagcaccGACAGc -3' miRNA: 3'- -CGC-CUAGCUUCGCGaGGcaau--UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 202737 | 0.7 | 0.987603 |
Target: 5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3' miRNA: 3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 197500 | 0.7 | 0.988919 |
Target: 5'- aCGGcgCGGAGCaguguucGUUCCGggGAACGGu -3' miRNA: 3'- cGCCuaGCUUCG-------CGAGGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 50397 | 0.7 | 0.990377 |
Target: 5'- uGCGGcuacuacucgccGUCGAcGCGCUCCGcgGAcucGCGGu -3' miRNA: 3'- -CGCC------------UAGCUuCGCGAGGCaaUU---UGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 104175 | 0.7 | 0.992638 |
Target: 5'- cGCGGGUCGcacGGCGUUgCGguagUAGACGu -3' miRNA: 3'- -CGCCUAGCu--UCGCGAgGCa---AUUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 216068 | 0.69 | 0.993953 |
Target: 5'- uGCGGGUCGAuugaugucgcguuacGGgGUgugCCGUUAAAUAc -3' miRNA: 3'- -CGCCUAGCU---------------UCgCGa--GGCAAUUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 86599 | 0.69 | 0.994455 |
Target: 5'- gGCGG--CGAAGCGCUCgCGcgAGAgGGa -3' miRNA: 3'- -CGCCuaGCUUCGCGAG-GCaaUUUgUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 153844 | 0.69 | 0.994455 |
Target: 5'- aCGGAUgGAcGCGCUCCagaccAGCAGg -3' miRNA: 3'- cGCCUAgCUuCGCGAGGcaau-UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 5669 | 0.69 | 0.994455 |
Target: 5'- gGgGGGUCGAgacacgGGCGC-CCGUccgcgggGAACGGg -3' miRNA: 3'- -CgCCUAGCU------UCGCGaGGCAa------UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 237034 | 0.69 | 0.994455 |
Target: 5'- uGCuGGAUCGcGGUGCUCUGUgccGCGa -3' miRNA: 3'- -CG-CCUAGCuUCGCGAGGCAauuUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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