miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 5669 0.69 0.994455
Target:  5'- gGgGGGUCGAgacacgGGCGC-CCGUccgcgggGAACGGg -3'
miRNA:   3'- -CgCCUAGCU------UCGCGaGGCAa------UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 27521 0.67 0.999306
Target:  5'- uGCGGccCGAGGCGCcCaCGguggcgUAGACGGu -3'
miRNA:   3'- -CGCCuaGCUUCGCGaG-GCa-----AUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 35218 0.69 0.995564
Target:  5'- cGCGGGUCGGaucgagcguccucggGGCGCgagacggcacagaggUCGggAGACAGa -3'
miRNA:   3'- -CGCCUAGCU---------------UCGCGa--------------GGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 36275 0.77 0.832989
Target:  5'- cGUGGAUCGAGGCGCUgCGcaccuCGGa -3'
miRNA:   3'- -CGCCUAGCUUCGCGAgGCaauuuGUC- -5'
14626 3' -49.6 NC_003521.1 + 39997 0.67 0.999436
Target:  5'- gGCGGAUCGGAGUccGCaaCGg-GAACGGc -3'
miRNA:   3'- -CGCCUAGCUUCG--CGagGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 45226 0.66 0.999707
Target:  5'- uGauGAUCGAAgGCGCcgcCCGgcAGACGGg -3'
miRNA:   3'- -CgcCUAGCUU-CGCGa--GGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 50397 0.7 0.990377
Target:  5'- uGCGGcuacuacucgccGUCGAcGCGCUCCGcgGAcucGCGGu -3'
miRNA:   3'- -CGCC------------UAGCUuCGCGAGGCaaUU---UGUC- -5'
14626 3' -49.6 NC_003521.1 + 52174 0.7 0.987603
Target:  5'- cGCGGGUCcgcccGCGaUUCCGUUGAcGCAGg -3'
miRNA:   3'- -CGCCUAGcuu--CGC-GAGGCAAUU-UGUC- -5'
14626 3' -49.6 NC_003521.1 + 60189 0.68 0.998498
Target:  5'- cGCGGcgUGAGaacGCGCgcaCGUUAGAUGGa -3'
miRNA:   3'- -CGCCuaGCUU---CGCGag-GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 61609 0.66 0.999633
Target:  5'- -gGGggCGcAGCGCUCCaacGGACGGg -3'
miRNA:   3'- cgCCuaGCuUCGCGAGGcaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 70948 0.66 0.999817
Target:  5'- aGCGag-CGGAGCgGCUCCG---GACGGa -3'
miRNA:   3'- -CGCcuaGCUUCG-CGAGGCaauUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 71454 0.68 0.998203
Target:  5'- cGCGGGggaaGAcauGCGC-CCGcUGAACAGa -3'
miRNA:   3'- -CGCCUag--CUu--CGCGaGGCaAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 85271 0.67 0.998752
Target:  5'- cGCcGGUCGcAGGCGCUCCuugacaaucucGUUGGAgAGa -3'
miRNA:   3'- -CGcCUAGC-UUCGCGAGG-----------CAAUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 85395 0.66 0.999701
Target:  5'- aGCGGGUCGGccAGCucgcacaGCUCCuggUAGGCGc -3'
miRNA:   3'- -CGCCUAGCU--UCG-------CGAGGca-AUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 86599 0.69 0.994455
Target:  5'- gGCGG--CGAAGCGCUCgCGcgAGAgGGa -3'
miRNA:   3'- -CGCCuaGCUUCGCGAG-GCaaUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 88068 0.68 0.998203
Target:  5'- cGCGGugGUCGGcGGCGC-CCGUgaccACGGg -3'
miRNA:   3'- -CGCC--UAGCU-UCGCGaGGCAauu-UGUC- -5'
14626 3' -49.6 NC_003521.1 + 89469 0.69 0.996485
Target:  5'- cGCGGAUC---GCGgUCCGcaGAGCGGg -3'
miRNA:   3'- -CGCCUAGcuuCGCgAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 92307 0.66 0.999544
Target:  5'- cGCGGGagGAGGCGCagCCGc--GGCAu -3'
miRNA:   3'- -CGCCUagCUUCGCGa-GGCaauUUGUc -5'
14626 3' -49.6 NC_003521.1 + 93981 0.68 0.998498
Target:  5'- gGCGGAggcgaggaCGAGGCGCcCCcc-AGACAGg -3'
miRNA:   3'- -CGCCUa-------GCUUCGCGaGGcaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 95017 0.66 0.999826
Target:  5'- uUGGcGUCGAagacgaucaccuccgAGCGCUCCGUcuuguugagguaGAGCAGg -3'
miRNA:   3'- cGCC-UAGCU---------------UCGCGAGGCAa-----------UUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.