Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14626 | 3' | -49.6 | NC_003521.1 | + | 131109 | 0.67 | 0.999306 |
Target: 5'- gGCGGggCGgcGCGgCUgCCGggaagGGACAGc -3' miRNA: 3'- -CGCCuaGCuuCGC-GA-GGCaa---UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 35218 | 0.69 | 0.995564 |
Target: 5'- cGCGGGUCGGaucgagcguccucggGGCGCgagacggcacagaggUCGggAGACAGa -3' miRNA: 3'- -CGCCUAGCU---------------UCGCGa--------------GGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 222377 | 0.69 | 0.99589 |
Target: 5'- cGCGG-UCGAAGCGgCacaggCCGcgcgucUUGAGCAGg -3' miRNA: 3'- -CGCCuAGCUUCGC-Ga----GGC------AAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 89469 | 0.69 | 0.996485 |
Target: 5'- cGCGGAUC---GCGgUCCGcaGAGCGGg -3' miRNA: 3'- -CGCCUAGcuuCGCgAGGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 104007 | 0.68 | 0.998203 |
Target: 5'- cGCGGcgCGAGGCGUgaUGUUucaccAGCAGg -3' miRNA: 3'- -CGCCuaGCUUCGCGagGCAAu----UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 71454 | 0.68 | 0.998203 |
Target: 5'- cGCGGGggaaGAcauGCGC-CCGcUGAACAGa -3' miRNA: 3'- -CGCCUag--CUu--CGCGaGGCaAUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 88068 | 0.68 | 0.998203 |
Target: 5'- cGCGGugGUCGGcGGCGC-CCGUgaccACGGg -3' miRNA: 3'- -CGCC--UAGCU-UCGCGaGGCAauu-UGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 105019 | 0.67 | 0.998968 |
Target: 5'- aGCGGGaacgGGAGCGCUUCGa-GGACGGc -3' miRNA: 3'- -CGCCUag--CUUCGCGAGGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 27521 | 0.67 | 0.999306 |
Target: 5'- uGCGGccCGAGGCGCcCaCGguggcgUAGACGGu -3' miRNA: 3'- -CGCCuaGCUUCGCGaG-GCa-----AUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 125529 | 0.69 | 0.995216 |
Target: 5'- -aGGAUCGGcAGCGCUUccugCGUcAGACGGc -3' miRNA: 3'- cgCCUAGCU-UCGCGAG----GCAaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 237034 | 0.69 | 0.994455 |
Target: 5'- uGCuGGAUCGcGGUGCUCUGUgccGCGa -3' miRNA: 3'- -CG-CCUAGCuUCGCGAGGCAauuUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 153844 | 0.69 | 0.994455 |
Target: 5'- aCGGAUgGAcGCGCUCCagaccAGCAGg -3' miRNA: 3'- cGCCUAgCUuCGCGAGGcaau-UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 36275 | 0.77 | 0.832989 |
Target: 5'- cGUGGAUCGAGGCGCUgCGcaccuCGGa -3' miRNA: 3'- -CGCCUAGCUUCGCGAgGCaauuuGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 186523 | 0.74 | 0.923993 |
Target: 5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3' miRNA: 3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 140746 | 0.72 | 0.966993 |
Target: 5'- gGCGG-UCGAGGCGCccgccUCCGUgccGGGCGa -3' miRNA: 3'- -CGCCuAGCUUCGCG-----AGGCAa--UUUGUc -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 122668 | 0.7 | 0.987603 |
Target: 5'- aGCGcGAUCGAGGCGC-CCagcaccGACAGc -3' miRNA: 3'- -CGC-CUAGCUUCGCGaGGcaau--UUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 130756 | 0.7 | 0.987603 |
Target: 5'- gGCGGG-CGcGAGCGCcgcgCCGgggGAGCAGa -3' miRNA: 3'- -CGCCUaGC-UUCGCGa---GGCaa-UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 202737 | 0.7 | 0.987603 |
Target: 5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3' miRNA: 3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 197500 | 0.7 | 0.988919 |
Target: 5'- aCGGcgCGGAGCaguguucGUUCCGggGAACGGu -3' miRNA: 3'- cGCCuaGCUUCG-------CGAGGCaaUUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 5669 | 0.69 | 0.994455 |
Target: 5'- gGgGGGUCGAgacacgGGCGC-CCGUccgcgggGAACGGg -3' miRNA: 3'- -CgCCUAGCU------UCGCGaGGCAa------UUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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