miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 131109 0.67 0.999306
Target:  5'- gGCGGggCGgcGCGgCUgCCGggaagGGACAGc -3'
miRNA:   3'- -CGCCuaGCuuCGC-GA-GGCaa---UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 35218 0.69 0.995564
Target:  5'- cGCGGGUCGGaucgagcguccucggGGCGCgagacggcacagaggUCGggAGACAGa -3'
miRNA:   3'- -CGCCUAGCU---------------UCGCGa--------------GGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 222377 0.69 0.99589
Target:  5'- cGCGG-UCGAAGCGgCacaggCCGcgcgucUUGAGCAGg -3'
miRNA:   3'- -CGCCuAGCUUCGC-Ga----GGC------AAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 89469 0.69 0.996485
Target:  5'- cGCGGAUC---GCGgUCCGcaGAGCGGg -3'
miRNA:   3'- -CGCCUAGcuuCGCgAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 104007 0.68 0.998203
Target:  5'- cGCGGcgCGAGGCGUgaUGUUucaccAGCAGg -3'
miRNA:   3'- -CGCCuaGCUUCGCGagGCAAu----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 71454 0.68 0.998203
Target:  5'- cGCGGGggaaGAcauGCGC-CCGcUGAACAGa -3'
miRNA:   3'- -CGCCUag--CUu--CGCGaGGCaAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 88068 0.68 0.998203
Target:  5'- cGCGGugGUCGGcGGCGC-CCGUgaccACGGg -3'
miRNA:   3'- -CGCC--UAGCU-UCGCGaGGCAauu-UGUC- -5'
14626 3' -49.6 NC_003521.1 + 105019 0.67 0.998968
Target:  5'- aGCGGGaacgGGAGCGCUUCGa-GGACGGc -3'
miRNA:   3'- -CGCCUag--CUUCGCGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 27521 0.67 0.999306
Target:  5'- uGCGGccCGAGGCGCcCaCGguggcgUAGACGGu -3'
miRNA:   3'- -CGCCuaGCUUCGCGaG-GCa-----AUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 125529 0.69 0.995216
Target:  5'- -aGGAUCGGcAGCGCUUccugCGUcAGACGGc -3'
miRNA:   3'- cgCCUAGCU-UCGCGAG----GCAaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 237034 0.69 0.994455
Target:  5'- uGCuGGAUCGcGGUGCUCUGUgccGCGa -3'
miRNA:   3'- -CG-CCUAGCuUCGCGAGGCAauuUGUc -5'
14626 3' -49.6 NC_003521.1 + 153844 0.69 0.994455
Target:  5'- aCGGAUgGAcGCGCUCCagaccAGCAGg -3'
miRNA:   3'- cGCCUAgCUuCGCGAGGcaau-UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 36275 0.77 0.832989
Target:  5'- cGUGGAUCGAGGCGCUgCGcaccuCGGa -3'
miRNA:   3'- -CGCCUAGCUUCGCGAgGCaauuuGUC- -5'
14626 3' -49.6 NC_003521.1 + 186523 0.74 0.923993
Target:  5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3'
miRNA:   3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 140746 0.72 0.966993
Target:  5'- gGCGG-UCGAGGCGCccgccUCCGUgccGGGCGa -3'
miRNA:   3'- -CGCCuAGCUUCGCG-----AGGCAa--UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 122668 0.7 0.987603
Target:  5'- aGCGcGAUCGAGGCGC-CCagcaccGACAGc -3'
miRNA:   3'- -CGC-CUAGCUUCGCGaGGcaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 130756 0.7 0.987603
Target:  5'- gGCGGG-CGcGAGCGCcgcgCCGgggGAGCAGa -3'
miRNA:   3'- -CGCCUaGC-UUCGCGa---GGCaa-UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 202737 0.7 0.987603
Target:  5'- cGCGGca-GggGCGCggggaccCCGUgugGAACAGa -3'
miRNA:   3'- -CGCCuagCuuCGCGa------GGCAa--UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 197500 0.7 0.988919
Target:  5'- aCGGcgCGGAGCaguguucGUUCCGggGAACGGu -3'
miRNA:   3'- cGCCuaGCUUCG-------CGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 5669 0.69 0.994455
Target:  5'- gGgGGGUCGAgacacgGGCGC-CCGUccgcgggGAACGGg -3'
miRNA:   3'- -CgCCUAGCU------UCGCGaGGCAa------UUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.