miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 3' -49.6 NC_003521.1 + 179073 0.66 0.999544
Target:  5'- aGCGGGUCGc-GUGC-CCGUcgucgguGACAGu -3'
miRNA:   3'- -CGCCUAGCuuCGCGaGGCAau-----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 223942 0.67 0.999436
Target:  5'- aGgGGGUCGAGGCGg-CCGcgggGAACGc -3'
miRNA:   3'- -CgCCUAGCUUCGCgaGGCaa--UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 240225 0.67 0.999436
Target:  5'- gGCGGAUCGGAGUccGCaaCGg-GAACGGc -3'
miRNA:   3'- -CGCCUAGCUUCG--CGagGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 174224 0.67 0.999436
Target:  5'- cGCGGGUCGGgcaggGGCGCgUCGgagcuCAGa -3'
miRNA:   3'- -CGCCUAGCU-----UCGCGaGGCaauuuGUC- -5'
14626 3' -49.6 NC_003521.1 + 39997 0.67 0.999436
Target:  5'- gGCGGAUCGGAGUccGCaaCGg-GAACGGc -3'
miRNA:   3'- -CGCCUAGCUUCG--CGagGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 27521 0.67 0.999306
Target:  5'- uGCGGccCGAGGCGCcCaCGguggcgUAGACGGu -3'
miRNA:   3'- -CGCCuaGCUUCGCGaG-GCa-----AUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 159103 0.67 0.999306
Target:  5'- uUGGAgCGggGCGaCUCCGUgcucuccugGGACGu -3'
miRNA:   3'- cGCCUaGCuuCGC-GAGGCAa--------UUUGUc -5'
14626 3' -49.6 NC_003521.1 + 131109 0.67 0.999306
Target:  5'- gGCGGggCGgcGCGgCUgCCGggaagGGACAGc -3'
miRNA:   3'- -CGCCuaGCuuCGC-GA-GGCaa---UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 212231 0.67 0.999151
Target:  5'- aGCGGGU-GAGGuCGCgcucgCCGggGGACAc -3'
miRNA:   3'- -CGCCUAgCUUC-GCGa----GGCaaUUUGUc -5'
14626 3' -49.6 NC_003521.1 + 111034 0.67 0.998968
Target:  5'- cGCGG-UCGGccucGGCGCgcaCGUgcgcgGGACAGg -3'
miRNA:   3'- -CGCCuAGCU----UCGCGag-GCAa----UUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 105019 0.67 0.998968
Target:  5'- aGCGGGaacgGGAGCGCUUCGa-GGACGGc -3'
miRNA:   3'- -CGCCUag--CUUCGCGAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 85271 0.67 0.998752
Target:  5'- cGCcGGUCGcAGGCGCUCCuugacaaucucGUUGGAgAGa -3'
miRNA:   3'- -CGcCUAGC-UUCGCGAGG-----------CAAUUUgUC- -5'
14626 3' -49.6 NC_003521.1 + 60189 0.68 0.998498
Target:  5'- cGCGGcgUGAGaacGCGCgcaCGUUAGAUGGa -3'
miRNA:   3'- -CGCCuaGCUU---CGCGag-GCAAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 93981 0.68 0.998498
Target:  5'- gGCGGAggcgaggaCGAGGCGCcCCcc-AGACAGg -3'
miRNA:   3'- -CGCCUa-------GCUUCGCGaGGcaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 71454 0.68 0.998203
Target:  5'- cGCGGGggaaGAcauGCGC-CCGcUGAACAGa -3'
miRNA:   3'- -CGCCUag--CUu--CGCGaGGCaAUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 88068 0.68 0.998203
Target:  5'- cGCGGugGUCGGcGGCGC-CCGUgaccACGGg -3'
miRNA:   3'- -CGCC--UAGCU-UCGCGaGGCAauu-UGUC- -5'
14626 3' -49.6 NC_003521.1 + 104007 0.68 0.998203
Target:  5'- cGCGGcgCGAGGCGUgaUGUUucaccAGCAGg -3'
miRNA:   3'- -CGCCuaGCUUCGCGagGCAAu----UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 89469 0.69 0.996485
Target:  5'- cGCGGAUC---GCGgUCCGcaGAGCGGg -3'
miRNA:   3'- -CGCCUAGcuuCGCgAGGCaaUUUGUC- -5'
14626 3' -49.6 NC_003521.1 + 102293 0.69 0.996485
Target:  5'- cGCGGcaagaaGUCGAGGUGCgCCGgacccAGCGGg -3'
miRNA:   3'- -CGCC------UAGCUUCGCGaGGCaau--UUGUC- -5'
14626 3' -49.6 NC_003521.1 + 222377 0.69 0.99589
Target:  5'- cGCGG-UCGAAGCGgCacaggCCGcgcgucUUGAGCAGg -3'
miRNA:   3'- -CGCCuAGCUUCGC-Ga----GGC------AAUUUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.