Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14626 | 3' | -49.6 | NC_003521.1 | + | 186523 | 0.74 | 0.923993 |
Target: 5'- gGCGGuGUCGccagcGGGgGCUCCGUgggAGGCAGg -3' miRNA: 3'- -CGCC-UAGC-----UUCgCGAGGCAa--UUUGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 178723 | 0.75 | 0.918379 |
Target: 5'- cGCGGGcgcCGAAGCGUUCCcgGUUGGACuGg -3' miRNA: 3'- -CGCCUa--GCUUCGCGAGG--CAAUUUGuC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 36275 | 0.77 | 0.832989 |
Target: 5'- cGUGGAUCGAGGCGCUgCGcaccuCGGa -3' miRNA: 3'- -CGCCUAGCUUCGCGAgGCaauuuGUC- -5' |
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14626 | 3' | -49.6 | NC_003521.1 | + | 225719 | 1.12 | 0.013141 |
Target: 5'- uGCGGAUCGAAGCGCUCCGUUAAACAGa -3' miRNA: 3'- -CGCCUAGCUUCGCGAGGCAAUUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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