miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 35809 0.66 0.845973
Target:  5'- gGC-GUcGCGGCACGcCGUCGUuaGCGg -3'
miRNA:   3'- aCGaCAaCGUCGUGC-GCGGCGagCGC- -5'
14626 5' -59.4 NC_003521.1 + 74634 0.66 0.845973
Target:  5'- aGCggggUGguGCGCgggacccuggaGCGCCGCUCGg- -3'
miRNA:   3'- aCGaca-ACguCGUG-----------CGCGGCGAGCgc -5'
14626 5' -59.4 NC_003521.1 + 149061 0.66 0.845973
Target:  5'- cGCUGggcuucgacGCGGC-CGCGCU-CUCGCa -3'
miRNA:   3'- aCGACaa-------CGUCGuGCGCGGcGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 127001 0.66 0.845973
Target:  5'- cGCUGcccgacgugGCGGUgcccgACGaCGCCGC-CGCGg -3'
miRNA:   3'- aCGACaa-------CGUCG-----UGC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 223657 0.66 0.830269
Target:  5'- aGCUGc--CAGCGCuGCGCCucggcCUCGCGc -3'
miRNA:   3'- aCGACaacGUCGUG-CGCGGc----GAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 211566 0.66 0.838207
Target:  5'- aGCca--GUAGCGCGCa-CGCUCGCGg -3'
miRNA:   3'- aCGacaaCGUCGUGCGcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 31420 0.66 0.838207
Target:  5'- aUGCUGgcgUGCAGCAgGCGgaugaUGCgcagCGCc -3'
miRNA:   3'- -ACGACa--ACGUCGUgCGCg----GCGa---GCGc -5'
14626 5' -59.4 NC_003521.1 + 107002 0.66 0.835843
Target:  5'- aUGgUGUUGCGGCAC-UGCUGCUUccagacguucacgaGCGc -3'
miRNA:   3'- -ACgACAACGUCGUGcGCGGCGAG--------------CGC- -5'
14626 5' -59.4 NC_003521.1 + 114932 0.66 0.838207
Target:  5'- aGCg---GCuGCugGagaGCUGCUCGCGc -3'
miRNA:   3'- aCGacaaCGuCGugCg--CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 142299 0.66 0.830269
Target:  5'- cGCUGcaGCGGCccagccgcGCGCGUCG-UCGCa -3'
miRNA:   3'- aCGACaaCGUCG--------UGCGCGGCgAGCGc -5'
14626 5' -59.4 NC_003521.1 + 164430 0.66 0.830269
Target:  5'- cGCUGgugcuaGCAGCGCcacCGCgGC-CGCGg -3'
miRNA:   3'- aCGACaa----CGUCGUGc--GCGgCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 127542 0.66 0.845973
Target:  5'- gUGCgGcgGCAGCACGCcgucgGCCagguGCUCgGCGa -3'
miRNA:   3'- -ACGaCaaCGUCGUGCG-----CGG----CGAG-CGC- -5'
14626 5' -59.4 NC_003521.1 + 42804 0.66 0.845973
Target:  5'- gGCg---GCuGCACGCGCCGCaacgGCa -3'
miRNA:   3'- aCGacaaCGuCGUGCGCGGCGag--CGc -5'
14626 5' -59.4 NC_003521.1 + 145251 0.66 0.845205
Target:  5'- gGCUGccUGCAGgGCGCcuccucgGCCucggcggccaGCUCGCGc -3'
miRNA:   3'- aCGACa-ACGUCgUGCG-------CGG----------CGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 139360 0.66 0.830269
Target:  5'- gUGUUGUaGCAGCugGCGaagagCGC-CGUGc -3'
miRNA:   3'- -ACGACAaCGUCGugCGCg----GCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 49008 0.66 0.838207
Target:  5'- gGCgucguagGggGCAGUACagucaCGCCGUUUGCGg -3'
miRNA:   3'- aCGa------CaaCGUCGUGc----GCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 112396 0.66 0.853562
Target:  5'- gGCUGgcGCAGUGCGCcgaccgGCCGCcuuUCGg- -3'
miRNA:   3'- aCGACaaCGUCGUGCG------CGGCG---AGCgc -5'
14626 5' -59.4 NC_003521.1 + 35820 0.66 0.860234
Target:  5'- gGCgagaaccugGCGGUGCGCGCCGaggauguagaguucaUCGCGg -3'
miRNA:   3'- aCGacaa-----CGUCGUGCGCGGCg--------------AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 167684 0.66 0.830269
Target:  5'- cGCgGUUGCGGUgACGa--CGCUCGUGg -3'
miRNA:   3'- aCGaCAACGUCG-UGCgcgGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 226336 0.66 0.838207
Target:  5'- gUGCa--UGguGCGCGCGCC-C-CGCGg -3'
miRNA:   3'- -ACGacaACguCGUGCGCGGcGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.