miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 225757 1.08 0.002587
Target:  5'- gUGCUGUUGCAGCACGCGCCGCUCGCGc -3'
miRNA:   3'- -ACGACAACGUCGUGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 57986 0.8 0.18081
Target:  5'- cUGCUGUUGuCAGCGC-CGCCGaUCGCGg -3'
miRNA:   3'- -ACGACAAC-GUCGUGcGCGGCgAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 174668 0.78 0.229213
Target:  5'- -uCUGUUGCuGCGCGCGCUGCgggUGCGa -3'
miRNA:   3'- acGACAACGuCGUGCGCGGCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 91000 0.78 0.242354
Target:  5'- cUGCUGUUGCAGCugcagcaggucggucACGgccgGCCGUUCGCGg -3'
miRNA:   3'- -ACGACAACGUCG---------------UGCg---CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 144298 0.78 0.251458
Target:  5'- cGCUGcUGCcGCACGCGCUGCgguUCGUGg -3'
miRNA:   3'- aCGACaACGuCGUGCGCGGCG---AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 124450 0.76 0.31482
Target:  5'- gGUUGggccgcgGCGGCACGCGUucgccgccgCGCUCGCGg -3'
miRNA:   3'- aCGACaa-----CGUCGUGCGCG---------GCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 181393 0.76 0.328855
Target:  5'- cGCUGccgGCGGCG-GCGCCGCugUCGCGu -3'
miRNA:   3'- aCGACaa-CGUCGUgCGCGGCG--AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 56143 0.75 0.350765
Target:  5'- gGCgagUGCGGCuCGUGCUGCUCGCu -3'
miRNA:   3'- aCGacaACGUCGuGCGCGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 100692 0.75 0.365937
Target:  5'- aUGCUGaUGCGG-AgGCGCCGC-CGCGg -3'
miRNA:   3'- -ACGACaACGUCgUgCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 168974 0.75 0.365937
Target:  5'- cUGCUGUcGCcGaCGCGCGUCGgUCGCGg -3'
miRNA:   3'- -ACGACAaCGuC-GUGCGCGGCgAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 59357 0.75 0.381556
Target:  5'- cGCUGcagGCGGCGCGCcaGCCGCUggacgcCGCGc -3'
miRNA:   3'- aCGACaa-CGUCGUGCG--CGGCGA------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 179462 0.74 0.405804
Target:  5'- aGCUGUUGCAGgaaGCGgGCCGUggGCa -3'
miRNA:   3'- aCGACAACGUCg--UGCgCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 198753 0.74 0.414098
Target:  5'- uUGCcGUgcucGCuGguCGCGCCGCUCGUGg -3'
miRNA:   3'- -ACGaCAa---CGuCguGCGCGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 99243 0.74 0.430997
Target:  5'- aGCUGacGguGCGCGCGUCGUcgCGCGc -3'
miRNA:   3'- aCGACaaCguCGUGCGCGGCGa-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 77085 0.74 0.430997
Target:  5'- cGCUGUUGCcGC-CgGCGCCGCUCa-- -3'
miRNA:   3'- aCGACAACGuCGuG-CGCGGCGAGcgc -5'
14626 5' -59.4 NC_003521.1 + 145578 0.73 0.439597
Target:  5'- gUGCUGcgGCGGCACGaCGCgGCggcCGUGg -3'
miRNA:   3'- -ACGACaaCGUCGUGC-GCGgCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 87619 0.73 0.439597
Target:  5'- aGgUGUgGCAGCAgGUGCCGC-CGCa -3'
miRNA:   3'- aCgACAaCGUCGUgCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 198019 0.73 0.439597
Target:  5'- uUGCcGUUGCGGCGCGUGCaGC-CGCc -3'
miRNA:   3'- -ACGaCAACGUCGUGCGCGgCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 36399 0.73 0.448293
Target:  5'- cUGCUGgcgGCAGCGCGgGgCGUggauuUCGCGg -3'
miRNA:   3'- -ACGACaa-CGUCGUGCgCgGCG-----AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 59153 0.73 0.448293
Target:  5'- aGCUGguggaucagcUGCGGCACgGCGCCGCggGCa -3'
miRNA:   3'- aCGACa---------ACGUCGUG-CGCGGCGagCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.