miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14626 5' -59.4 NC_003521.1 + 157975 0.71 0.588115
Target:  5'- cGCUG--GUAGCgACGcCGCCGCcCGCGg -3'
miRNA:   3'- aCGACaaCGUCG-UGC-GCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 233073 0.72 0.50235
Target:  5'- cUGCUGggacUGCcGC-CGCcuccGCCGCUCGCGc -3'
miRNA:   3'- -ACGACa---ACGuCGuGCG----CGGCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 137690 0.72 0.530431
Target:  5'- cUGgUGcUGCAGCAC-CGCCGCgCGCu -3'
miRNA:   3'- -ACgACaACGUCGUGcGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 135339 0.72 0.539921
Target:  5'- gGCggGUUGCcucccucccGCGCGCGCCGuCUcCGCGg -3'
miRNA:   3'- aCGa-CAACGu--------CGUGCGCGGC-GA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 103375 0.71 0.559065
Target:  5'- cGCagaccgUGUcggGCAGC-CGCGCgUGCUCGCGg -3'
miRNA:   3'- aCG------ACAa--CGUCGuGCGCG-GCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 134542 0.71 0.567743
Target:  5'- uUGCUGUUGCccuccacGGCgAUGCGCaGCUCGUc -3'
miRNA:   3'- -ACGACAACG-------UCG-UGCGCGgCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 137298 0.71 0.568709
Target:  5'- aGCUGcggGUGGCGCG-GCUGCUgCGCGg -3'
miRNA:   3'- aCGACaa-CGUCGUGCgCGGCGA-GCGC- -5'
14626 5' -59.4 NC_003521.1 + 225972 0.71 0.568709
Target:  5'- cGCUGUUGgc-CACGCGCCGCaCGUa -3'
miRNA:   3'- aCGACAACgucGUGCGCGGCGaGCGc -5'
14626 5' -59.4 NC_003521.1 + 150619 0.71 0.578394
Target:  5'- gGCUGUUGCGGCG-GCuGCUGCgcagGCGg -3'
miRNA:   3'- aCGACAACGUCGUgCG-CGGCGag--CGC- -5'
14626 5' -59.4 NC_003521.1 + 129996 0.72 0.493133
Target:  5'- cGCUGcgccggcgGCGGCGCGCaacgGCCGCUgGCu -3'
miRNA:   3'- aCGACaa------CGUCGUGCG----CGGCGAgCGc -5'
14626 5' -59.4 NC_003521.1 + 59153 0.73 0.448293
Target:  5'- aGCUGguggaucagcUGCGGCACgGCGCCGCggGCa -3'
miRNA:   3'- aCGACa---------ACGUCGUG-CGCGGCGagCGc -5'
14626 5' -59.4 NC_003521.1 + 145578 0.73 0.439597
Target:  5'- gUGCUGcgGCGGCACGaCGCgGCggcCGUGg -3'
miRNA:   3'- -ACGACaaCGUCGUGC-GCGgCGa--GCGC- -5'
14626 5' -59.4 NC_003521.1 + 57986 0.8 0.18081
Target:  5'- cUGCUGUUGuCAGCGC-CGCCGaUCGCGg -3'
miRNA:   3'- -ACGACAAC-GUCGUGcGCGGCgAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 144298 0.78 0.251458
Target:  5'- cGCUGcUGCcGCACGCGCUGCgguUCGUGg -3'
miRNA:   3'- aCGACaACGuCGUGCGCGGCG---AGCGC- -5'
14626 5' -59.4 NC_003521.1 + 124450 0.76 0.31482
Target:  5'- gGUUGggccgcgGCGGCACGCGUucgccgccgCGCUCGCGg -3'
miRNA:   3'- aCGACaa-----CGUCGUGCGCG---------GCGAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 56143 0.75 0.350765
Target:  5'- gGCgagUGCGGCuCGUGCUGCUCGCu -3'
miRNA:   3'- aCGacaACGUCGuGCGCGGCGAGCGc -5'
14626 5' -59.4 NC_003521.1 + 168974 0.75 0.365937
Target:  5'- cUGCUGUcGCcGaCGCGCGUCGgUCGCGg -3'
miRNA:   3'- -ACGACAaCGuC-GUGCGCGGCgAGCGC- -5'
14626 5' -59.4 NC_003521.1 + 100692 0.75 0.365937
Target:  5'- aUGCUGaUGCGG-AgGCGCCGC-CGCGg -3'
miRNA:   3'- -ACGACaACGUCgUgCGCGGCGaGCGC- -5'
14626 5' -59.4 NC_003521.1 + 59357 0.75 0.381556
Target:  5'- cGCUGcagGCGGCGCGCcaGCCGCUggacgcCGCGc -3'
miRNA:   3'- aCGACaa-CGUCGUGCG--CGGCGA------GCGC- -5'
14626 5' -59.4 NC_003521.1 + 87619 0.73 0.439597
Target:  5'- aGgUGUgGCAGCAgGUGCCGC-CGCa -3'
miRNA:   3'- aCgACAaCGUCGUgCGCGGCGaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.