Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 101366 | 0.66 | 0.780396 |
Target: 5'- gGUCgaguucCGCUGCCGCuacaccuUCGCGCgCGAc -3' miRNA: 3'- gCAGacc---GCGACGGCG-------AGCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 8415 | 0.66 | 0.798326 |
Target: 5'- gCG-CUGGCGUugccgUGCCGCagGCGCagccagcgCGAg -3' miRNA: 3'- -GCaGACCGCG-----ACGGCGagCGCGa-------GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 98906 | 0.66 | 0.789856 |
Target: 5'- gGUCaGGCgGCUGUagugcgucUGCUCGCGCaCGGc -3' miRNA: 3'- gCAGaCCG-CGACG--------GCGAGCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 212420 | 0.66 | 0.806664 |
Target: 5'- uGUCggaGGCGUUGaucuggcgaCaCUCGUGCUCGAa -3' miRNA: 3'- gCAGa--CCGCGACg--------GcGAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 121133 | 0.66 | 0.789856 |
Target: 5'- aCGcCgUGGaGCUGCUG-UCGUGCUCGGa -3' miRNA: 3'- -GCaG-ACCgCGACGGCgAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 221766 | 0.66 | 0.789002 |
Target: 5'- gCGUCUGcgccGCGCcGCCGUccUCGaagcuccagcgucCGCUCGAu -3' miRNA: 3'- -GCAGAC----CGCGaCGGCG--AGC-------------GCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 136881 | 0.66 | 0.772551 |
Target: 5'- gCGggUGGCGCcGgUGUUCGCGgUCGAc -3' miRNA: 3'- -GCagACCGCGaCgGCGAGCGCgAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 33934 | 0.66 | 0.772551 |
Target: 5'- ---aUGGUGCUGCUGUgcggCGUGCgcggCGAg -3' miRNA: 3'- gcagACCGCGACGGCGa---GCGCGa---GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 209528 | 0.66 | 0.806664 |
Target: 5'- cCGUCgc-CGCUGCCGCgguuaUGCGCcCGGc -3' miRNA: 3'- -GCAGaccGCGACGGCGa----GCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 181335 | 0.66 | 0.805836 |
Target: 5'- cCGUCUGGUucuguaGCUGCaGCgugauugUCGCGCcCGGa -3' miRNA: 3'- -GCAGACCG------CGACGgCG-------AGCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 62440 | 0.66 | 0.798326 |
Target: 5'- uCGUCUGaGC-CcGCCGCgCGCGCaCGGg -3' miRNA: 3'- -GCAGAC-CGcGaCGGCGaGCGCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 144273 | 0.66 | 0.771674 |
Target: 5'- uGUCUgcugggcgagcacGGCgacucgcuGCUGCCGCaCGCGCUgCGGu -3' miRNA: 3'- gCAGA-------------CCG--------CGACGGCGaGCGCGA-GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 59254 | 0.66 | 0.772551 |
Target: 5'- ---gUGGgGCUGCUGCggGCGUUCGu -3' miRNA: 3'- gcagACCgCGACGGCGagCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 197577 | 0.66 | 0.772551 |
Target: 5'- uCGggagCUGGCGCUGCUaCUCGCcCUUc- -3' miRNA: 3'- -GCa---GACCGCGACGGcGAGCGcGAGcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 153431 | 0.66 | 0.789856 |
Target: 5'- gGUCa-GCaGCaGCCGgUCGCGCUCGu -3' miRNA: 3'- gCAGacCG-CGaCGGCgAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 43107 | 0.66 | 0.789856 |
Target: 5'- aCGagCUGaccaaGCGCUGCgGCgaGCGCUCGGc -3' miRNA: 3'- -GCa-GAC-----CGCGACGgCGagCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 164780 | 0.66 | 0.801677 |
Target: 5'- gCGUCUGGCggcccgcuccgaggaGCUGCCGUcggUGgGCgacCGAg -3' miRNA: 3'- -GCAGACCG---------------CGACGGCGa--GCgCGa--GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 99010 | 0.67 | 0.754807 |
Target: 5'- --aCUGGUGCUGuuGC---CGCUCGAg -3' miRNA: 3'- gcaGACCGCGACggCGagcGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 28977 | 0.67 | 0.754807 |
Target: 5'- gCGaUCgUGGuCGCUGCCGUaCGCGaaCGAg -3' miRNA: 3'- -GC-AG-ACC-GCGACGGCGaGCGCgaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 137302 | 0.67 | 0.736685 |
Target: 5'- gCGggUGGCGCgGCUGCU-GCGCggCGAc -3' miRNA: 3'- -GCagACCGCGaCGGCGAgCGCGa-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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