miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 8415 0.66 0.798326
Target:  5'- gCG-CUGGCGUugccgUGCCGCagGCGCagccagcgCGAg -3'
miRNA:   3'- -GCaGACCGCG-----ACGGCGagCGCGa-------GCU- -5'
14627 3' -61.4 NC_003521.1 + 14388 0.69 0.594674
Target:  5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3'
miRNA:   3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 15701 0.67 0.708923
Target:  5'- aCGUCgaccaGGUGCUGUCGCUCG-GCa--- -3'
miRNA:   3'- -GCAGa----CCGCGACGGCGAGCgCGagcu -5'
14627 3' -61.4 NC_003521.1 + 19078 0.67 0.736685
Target:  5'- aCG-CUGaCGCUGUCGUUC-CGCUUGAu -3'
miRNA:   3'- -GCaGACcGCGACGGCGAGcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 22739 0.69 0.632914
Target:  5'- uCGUCaccGGCGCcGCCGcCUCGCuguGCUuCGAg -3'
miRNA:   3'- -GCAGa--CCGCGaCGGC-GAGCG---CGA-GCU- -5'
14627 3' -61.4 NC_003521.1 + 25623 0.69 0.632914
Target:  5'- cCGggCUGGCGCUGCUGg-CGCGUgaccaCGAc -3'
miRNA:   3'- -GCa-GACCGCGACGGCgaGCGCGa----GCU- -5'
14627 3' -61.4 NC_003521.1 + 28977 0.67 0.754807
Target:  5'- gCGaUCgUGGuCGCUGCCGUaCGCGaaCGAg -3'
miRNA:   3'- -GC-AG-ACC-GCGACGGCGaGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 32876 0.67 0.740337
Target:  5'- gGUUUGGCGCccgcgccgccggugcUGCCGC-CGUGCcCGc -3'
miRNA:   3'- gCAGACCGCG---------------ACGGCGaGCGCGaGCu -5'
14627 3' -61.4 NC_003521.1 + 33934 0.66 0.772551
Target:  5'- ---aUGGUGCUGCUGUgcggCGUGCgcggCGAg -3'
miRNA:   3'- gcagACCGCGACGGCGa---GCGCGa---GCU- -5'
14627 3' -61.4 NC_003521.1 + 36794 0.69 0.642489
Target:  5'- aCGcgCU-GCGgaGCCGCUCGCGgaCGGc -3'
miRNA:   3'- -GCa-GAcCGCgaCGGCGAGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 43107 0.66 0.789856
Target:  5'- aCGagCUGaccaaGCGCUGCgGCgaGCGCUCGGc -3'
miRNA:   3'- -GCa-GAC-----CGCGACGgCGagCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 43883 0.67 0.716384
Target:  5'- cCGUCgcccacgcuaccGGUGCUGCCGgUgacgaCGCGCUCa- -3'
miRNA:   3'- -GCAGa-----------CCGCGACGGCgA-----GCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 53465 0.71 0.528879
Target:  5'- uCGUCgGGaUGCUGCUGCUCGaGCcCGAa -3'
miRNA:   3'- -GCAGaCC-GCGACGGCGAGCgCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 56137 0.7 0.575675
Target:  5'- aCGUCgGGCGagUGCgGCUCGUGCUg-- -3'
miRNA:   3'- -GCAGaCCGCg-ACGgCGAGCGCGAgcu -5'
14627 3' -61.4 NC_003521.1 + 59254 0.66 0.772551
Target:  5'- ---gUGGgGCUGCUGCggGCGUUCGu -3'
miRNA:   3'- gcagACCgCGACGGCGagCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 62440 0.66 0.798326
Target:  5'- uCGUCUGaGC-CcGCCGCgCGCGCaCGGg -3'
miRNA:   3'- -GCAGAC-CGcGaCGGCGaGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 75986 0.7 0.544651
Target:  5'- aGUCUGGCGCcgGCCGCcgguUCcuccucccccgcggGCGCUCc- -3'
miRNA:   3'- gCAGACCGCGa-CGGCG----AG--------------CGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 84453 0.68 0.690117
Target:  5'- gGUCaGGCGCUGCaggaGaCgguaGCGCUUGAg -3'
miRNA:   3'- gCAGaCCGCGACGg---C-Gag--CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 86692 0.72 0.457276
Target:  5'- aCG-CUGGCGCUGCCGCccUUGCccgGCcgCGAg -3'
miRNA:   3'- -GCaGACCGCGACGGCG--AGCG---CGa-GCU- -5'
14627 3' -61.4 NC_003521.1 + 89181 0.67 0.718243
Target:  5'- gGcCUGGCcCUGCUGgaCGUGCUCa- -3'
miRNA:   3'- gCaGACCGcGACGGCgaGCGCGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.