miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 169862 0.67 0.705177
Target:  5'- cCGUC-GGCGUggcuccguccggaGCCGCUC-CGCUCGc -3'
miRNA:   3'- -GCAGaCCGCGa------------CGGCGAGcGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 15701 0.67 0.708923
Target:  5'- aCGUCgaccaGGUGCUGUCGCUCG-GCa--- -3'
miRNA:   3'- -GCAGa----CCGCGACGGCGAGCgCGagcu -5'
14627 3' -61.4 NC_003521.1 + 89181 0.67 0.718243
Target:  5'- gGcCUGGCcCUGCUGgaCGUGCUCa- -3'
miRNA:   3'- gCaGACCGcGACGGCgaGCGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 174449 0.67 0.718243
Target:  5'- aCGcgCUGGUGUcGCUGCUCGcCGC-CGGc -3'
miRNA:   3'- -GCa-GACCGCGaCGGCGAGC-GCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 172312 0.67 0.7275
Target:  5'- uGUCggUGGCGCcagGCCGgUCGCGg-CGGa -3'
miRNA:   3'- gCAG--ACCGCGa--CGGCgAGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 25623 0.69 0.632914
Target:  5'- cCGggCUGGCGCUGCUGg-CGCGUgaccaCGAc -3'
miRNA:   3'- -GCa-GACCGCGACGGCgaGCGCGa----GCU- -5'
14627 3' -61.4 NC_003521.1 + 139321 0.69 0.632914
Target:  5'- gGUC-GGcCGCgucugGCCGC-CGCuGCUCGAg -3'
miRNA:   3'- gCAGaCC-GCGa----CGGCGaGCG-CGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 197851 0.74 0.331671
Target:  5'- uCGUCggugGGCGCcgGCgGgUCGCGCUCGc -3'
miRNA:   3'- -GCAGa---CCGCGa-CGgCgAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 185077 0.73 0.407133
Target:  5'- gCGcCUGuCGCUGCCGCccgCGCGCUgGGa -3'
miRNA:   3'- -GCaGACcGCGACGGCGa--GCGCGAgCU- -5'
14627 3' -61.4 NC_003521.1 + 223780 0.73 0.407133
Target:  5'- gCGcugCUGGUGCUGCCGUugUCGuCGCUCc- -3'
miRNA:   3'- -GCa--GACCGCGACGGCG--AGC-GCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 206309 0.72 0.457276
Target:  5'- gCGUCUcGGCccGCgGCCGCUaccUGCGCUCGc -3'
miRNA:   3'- -GCAGA-CCG--CGaCGGCGA---GCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 95094 0.71 0.501475
Target:  5'- -cUCgGGCGCcuugagcgGCCGCgCGCGCUUGAg -3'
miRNA:   3'- gcAGaCCGCGa-------CGGCGaGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 53465 0.71 0.528879
Target:  5'- uCGUCgGGaUGCUGCUGCUCGaGCcCGAa -3'
miRNA:   3'- -GCAGaCC-GCGACGGCGAGCgCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 75986 0.7 0.544651
Target:  5'- aGUCUGGCGCcgGCCGCcgguUCcuccucccccgcggGCGCUCc- -3'
miRNA:   3'- gCAGACCGCGa-CGGCG----AG--------------CGCGAGcu -5'
14627 3' -61.4 NC_003521.1 + 175302 0.7 0.547451
Target:  5'- gGUCUcGGCGUcGCCcaGCUgacaGCGCUCGAu -3'
miRNA:   3'- gCAGA-CCGCGaCGG--CGAg---CGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 198762 0.7 0.547451
Target:  5'- uCG-CUGGuCGC-GCCGCUCGUGggCGAg -3'
miRNA:   3'- -GCaGACC-GCGaCGGCGAGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 214827 0.69 0.593722
Target:  5'- gGUCUgcGGCGCUGCgGCUucaucacCGUGCcCGAc -3'
miRNA:   3'- gCAGA--CCGCGACGgCGA-------GCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 14388 0.69 0.594674
Target:  5'- aCGagCUGGCGCgcuacGgCGUgUCGCGCUCGGa -3'
miRNA:   3'- -GCa-GACCGCGa----CgGCG-AGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 167591 0.69 0.604213
Target:  5'- uGUCgauggagagcGGCGCgcagaggcGCCGCagGCGCUCGGg -3'
miRNA:   3'- gCAGa---------CCGCGa-------CGGCGagCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 97276 0.69 0.623339
Target:  5'- ---aUGGCgGCUGCUGCUCGuCGC-CGGc -3'
miRNA:   3'- gcagACCG-CGACGGCGAGC-GCGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.