miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 202636 0.68 0.997683
Target:  5'- cGAcCGcGAGCACUGgg---AGCGGCCCCg -3'
miRNA:   3'- -CU-GC-CUUGUGGUagaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 202472 0.7 0.992094
Target:  5'- gGACGagcuGggUGCCGUCUUcGGCuacuGCCCCc -3'
miRNA:   3'- -CUGC----CuuGUGGUAGAAaUUGu---CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 201015 0.69 0.995147
Target:  5'- cGGCGGAGgaccgcccggcgcccCGCCGagccucaacuUCUggAACAGCCCg -3'
miRNA:   3'- -CUGCCUU---------------GUGGU----------AGAaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 197008 0.67 0.999077
Target:  5'- cGGCGGcuGAC-CCGgcugCUgcgacaUGGCGGCCCCc -3'
miRNA:   3'- -CUGCC--UUGuGGUa---GAa-----AUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 196978 0.69 0.995569
Target:  5'- -cCGGGGCGCCug---UGACGGgCCCg -3'
miRNA:   3'- cuGCCUUGUGGuagaaAUUGUCgGGG- -5'
14627 5' -49.5 NC_003521.1 + 196744 0.78 0.781275
Target:  5'- cGGCGGcgccuGCACCGUCU---GCuGCCCCg -3'
miRNA:   3'- -CUGCCu----UGUGGUAGAaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 195295 0.7 0.991875
Target:  5'- uGACGGGGCGCCcgCUccaaguccauGCGGCUCg -3'
miRNA:   3'- -CUGCCUUGUGGuaGAaau-------UGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 195266 0.71 0.983185
Target:  5'- cGACGGAugACGCCGUCUaUAA-AGCUCa -3'
miRNA:   3'- -CUGCCU--UGUGGUAGAaAUUgUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 194373 0.66 0.9998
Target:  5'- cGACGaGGCcgACCAgcccccGCAGCCCCg -3'
miRNA:   3'- -CUGCcUUG--UGGUagaaauUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 192985 0.68 0.998372
Target:  5'- cGGCGGGcACGCuCGUCauacuCAGCCUCu -3'
miRNA:   3'- -CUGCCU-UGUG-GUAGaaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 191144 0.68 0.996766
Target:  5'- uGACGGcgacAGCGCCGcgCUcgccCGGCCCCu -3'
miRNA:   3'- -CUGCC----UUGUGGUa-GAaauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 188741 0.67 0.998879
Target:  5'- aGACGGggUuAUCGUaagugUAcCGGCCCCg -3'
miRNA:   3'- -CUGCCuuG-UGGUAgaa--AUuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 188281 0.68 0.998018
Target:  5'- uGCGGAagaagagGgGCC-UCUUUGGCGGCUCUu -3'
miRNA:   3'- cUGCCU-------UgUGGuAGAAAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 187358 0.66 0.9996
Target:  5'- --aGGAGCGCUcgCUggagGAC-GCCCUg -3'
miRNA:   3'- cugCCUUGUGGuaGAaa--UUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 187303 0.69 0.99302
Target:  5'- aGCGGAcaGCACCAUCggccgcUGcgacgccgcagcaGCGGCCUCg -3'
miRNA:   3'- cUGCCU--UGUGGUAGaa----AU-------------UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 187219 0.72 0.965
Target:  5'- cGGCGGAGCagcagccucaGCCAagugagCUUcgaGGCGGCCCCg -3'
miRNA:   3'- -CUGCCUUG----------UGGUa-----GAAa--UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 185546 0.66 0.9998
Target:  5'- uGACGGAGcCACCAag---GGCAGUCUg -3'
miRNA:   3'- -CUGCCUU-GUGGUagaaaUUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 184828 0.71 0.975554
Target:  5'- gGugGaGAACGCCGUggaccggcuGCGGCCCCu -3'
miRNA:   3'- -CugC-CUUGUGGUAgaaau----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 181565 0.69 0.993118
Target:  5'- cGCGcuuacGAACGCCcgC---AGCAGCCCCa -3'
miRNA:   3'- cUGC-----CUUGUGGuaGaaaUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 180906 0.66 0.999503
Target:  5'- gGugGGAGC-CCAcCUUguacuGCGGCCgCu -3'
miRNA:   3'- -CugCCUUGuGGUaGAAau---UGUCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.