miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 5' -49.5 NC_003521.1 + 180642 0.72 0.961575
Target:  5'- cGCGcGcACACUGUCUgUAGCGGCUCCa -3'
miRNA:   3'- cUGC-CuUGUGGUAGAaAUUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 178026 0.66 0.999503
Target:  5'- cGCGGAucucCGCCGUCUUuuggggggugUAGCAcaccucGCCCUc -3'
miRNA:   3'- cUGCCUu---GUGGUAGAA----------AUUGU------CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 176185 0.7 0.991875
Target:  5'- --aGGaAACACCGUCaccaauagggGGCAGUCCCa -3'
miRNA:   3'- cugCC-UUGUGGUAGaaa-------UUGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 175459 0.73 0.945568
Target:  5'- cGGCGGcGCGCCGUCUccccgGACAGCacguCCu -3'
miRNA:   3'- -CUGCCuUGUGGUAGAaa---UUGUCGg---GG- -5'
14627 5' -49.5 NC_003521.1 + 173680 0.71 0.981158
Target:  5'- uACGGAGCccCCGUCcuguGCGGCCCg -3'
miRNA:   3'- cUGCCUUGu-GGUAGaaauUGUCGGGg -5'
14627 5' -49.5 NC_003521.1 + 168517 0.67 0.999245
Target:  5'- gGACGGcGACGCCAgcaggCU--GGCGGCCa- -3'
miRNA:   3'- -CUGCC-UUGUGGUa----GAaaUUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 166242 0.66 0.999746
Target:  5'- cGCGGGACGCCG-Cgcc-GCcGCUCCg -3'
miRNA:   3'- cUGCCUUGUGGUaGaaauUGuCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 165997 0.77 0.79977
Target:  5'- cGCGGGACGCCGUCgcgcuCGGCgCCg -3'
miRNA:   3'- cUGCCUUGUGGUAGaaauuGUCGgGG- -5'
14627 5' -49.5 NC_003521.1 + 164273 0.72 0.971197
Target:  5'- cGCGGAcCGCCGcUCcugGACAGCCaCCg -3'
miRNA:   3'- cUGCCUuGUGGU-AGaaaUUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 162597 0.68 0.997683
Target:  5'- uGCGGuGGCACUcgCUc-GACAGCCuCCg -3'
miRNA:   3'- cUGCC-UUGUGGuaGAaaUUGUCGG-GG- -5'
14627 5' -49.5 NC_003521.1 + 162340 0.66 0.9996
Target:  5'- aGGCGGcGACugCGggcgUGggcgcGCAGCCCCc -3'
miRNA:   3'- -CUGCC-UUGugGUagaaAU-----UGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 161973 0.7 0.989686
Target:  5'- cGGCGGAuCACCAcCUUcGGCugguGCUCCg -3'
miRNA:   3'- -CUGCCUuGUGGUaGAAaUUGu---CGGGG- -5'
14627 5' -49.5 NC_003521.1 + 160545 0.66 0.9998
Target:  5'- -uCGGAcGCGCCGUCgucuucgAACcaAGCUCCg -3'
miRNA:   3'- cuGCCU-UGUGGUAGaaa----UUG--UCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 158716 0.72 0.975038
Target:  5'- --gGGGACACCGUCUUUguggccuaucacgagGACAGCUa- -3'
miRNA:   3'- cugCCUUGUGGUAGAAA---------------UUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 156590 0.66 0.9996
Target:  5'- gGugGGGGuCACCAUCc--AGCAGCUa- -3'
miRNA:   3'- -CugCCUU-GUGGUAGaaaUUGUCGGgg -5'
14627 5' -49.5 NC_003521.1 + 155567 0.67 0.998645
Target:  5'- cGCGGAGCggguaGCCAguuaUUUGcgcgcCGGCCCCa -3'
miRNA:   3'- cUGCCUUG-----UGGUag--AAAUu----GUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 154713 0.68 0.998372
Target:  5'- cGAgGaGAACACCAUCc--AGCGGCUgCa -3'
miRNA:   3'- -CUgC-CUUGUGGUAGaaaUUGUCGGgG- -5'
14627 5' -49.5 NC_003521.1 + 154659 0.69 0.993118
Target:  5'- -cUGGugcGCACCGUCUUcgAGCAGCgcuCCCu -3'
miRNA:   3'- cuGCCu--UGUGGUAGAAa-UUGUCG---GGG- -5'
14627 5' -49.5 NC_003521.1 + 153613 0.69 0.993118
Target:  5'- gGGCGGAGCGacuucgucaaCGUCUUcu-CGGCCCUc -3'
miRNA:   3'- -CUGCCUUGUg---------GUAGAAauuGUCGGGG- -5'
14627 5' -49.5 NC_003521.1 + 151572 0.67 0.998645
Target:  5'- cGCGGGACGCgGcgCgcgUUAGCGGUCuCCg -3'
miRNA:   3'- cUGCCUUGUGgUa-Ga--AAUUGUCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.