miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 226193 1.11 0.00271
Target:  5'- aCGCACUGCAGCUGCUGCACGGUCUUCa -3'
miRNA:   3'- -GCGUGACGUCGACGACGUGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 86759 0.86 0.117805
Target:  5'- aGCuuuCUGCGGCUGCUGCACGG-CUUUa -3'
miRNA:   3'- gCGu--GACGUCGACGACGUGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 70664 0.77 0.380843
Target:  5'- gGUGCUGCAGCUGCUGCugGaaaaccgacggcGUCUg- -3'
miRNA:   3'- gCGUGACGUCGACGACGugC------------CAGAag -5'
14628 3' -56.4 NC_003521.1 + 28852 0.77 0.405736
Target:  5'- aCGaGCUGCGGCgGCgcgGCACGGUCgagUCg -3'
miRNA:   3'- -GCgUGACGUCGaCGa--CGUGCCAGa--AG- -5'
14628 3' -56.4 NC_003521.1 + 168624 0.73 0.583356
Target:  5'- gCGCcauCUGCuguuGCUGCUGCgccACGGUCaUCg -3'
miRNA:   3'- -GCGu--GACGu---CGACGACG---UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 137444 0.73 0.593359
Target:  5'- aGCACgcGCGGCUGCccGaCACGGUCUg- -3'
miRNA:   3'- gCGUGa-CGUCGACGa-C-GUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 207547 0.73 0.603389
Target:  5'- aGCuCUcGCAGCUGCUGCACGaUCg-- -3'
miRNA:   3'- gCGuGA-CGUCGACGACGUGCcAGaag -5'
14628 3' -56.4 NC_003521.1 + 114249 0.73 0.61344
Target:  5'- gGCACgacgGCGGCUucccGCUGCccACGGcCUUCg -3'
miRNA:   3'- gCGUGa---CGUCGA----CGACG--UGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 198029 0.72 0.643644
Target:  5'- gGCGCgUGCAGCcgccggGCUGCACGGgcaggugCUUg -3'
miRNA:   3'- gCGUG-ACGUCGa-----CGACGUGCCa------GAAg -5'
14628 3' -56.4 NC_003521.1 + 210506 0.72 0.653705
Target:  5'- gGCGCaGUuGCUGgaGCGCGGUCUg- -3'
miRNA:   3'- gCGUGaCGuCGACgaCGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 114090 0.72 0.653705
Target:  5'- uCGUGCUGUacaacGGCUGCUGUGCGGUg--- -3'
miRNA:   3'- -GCGUGACG-----UCGACGACGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 223843 0.72 0.663749
Target:  5'- uGCuguccCUGCGGCUGCUGCuGCGG-CUg- -3'
miRNA:   3'- gCGu----GACGUCGACGACG-UGCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 162460 0.72 0.663749
Target:  5'- aGUACg--AGCUGCUGCugGG-CUUCa -3'
miRNA:   3'- gCGUGacgUCGACGACGugCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 98821 0.71 0.683755
Target:  5'- gGCGUUGCAGCUGCUugGCGCGGg---- -3'
miRNA:   3'- gCGUGACGUCGACGA--CGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 26163 0.71 0.6937
Target:  5'- aCGgACUGCuGCUGCUGgagacggccauCACGGugcUCUUCa -3'
miRNA:   3'- -GCgUGACGuCGACGAC-----------GUGCC---AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 26565 0.71 0.732897
Target:  5'- aGCugaUGCAcaagauGCUGCUGUgccucuacACGGUCUUCg -3'
miRNA:   3'- gCGug-ACGU------CGACGACG--------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 120603 0.7 0.742507
Target:  5'- uGCACUGcCAGgUGUUGCGCcuGGUCa-- -3'
miRNA:   3'- gCGUGAC-GUCgACGACGUG--CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 114952 0.7 0.742507
Target:  5'- uCGCGCagcgGCGGCUGCUGCGgcGUCagUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGACGUgcCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 92226 0.7 0.742507
Target:  5'- aGCGCUGUgagggcccgacgGGC-GCcGCGCGGUCUUUu -3'
miRNA:   3'- gCGUGACG------------UCGaCGaCGUGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 56498 0.7 0.761437
Target:  5'- aGUACUGCGGCUGacgGCcGCGGUagcgUUUCa -3'
miRNA:   3'- gCGUGACGUCGACga-CG-UGCCA----GAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.